miRNA display CGI


Results 41 - 60 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 155911 0.72 0.635318
Target:  5'- uCGCAGCGGC--GUGCCGUgCGCgAAUg -3'
miRNA:   3'- uGUGUCGCCGuuUACGGCG-GCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 8272 0.74 0.497392
Target:  5'- -gGCAGCGGCGcAUacccacGCCGCCGUgGGCg -3'
miRNA:   3'- ugUGUCGCCGUuUA------CGGCGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 103029 0.79 0.293421
Target:  5'- cCGCGGCGGCAGcgGCCGCgGCUucCa -3'
miRNA:   3'- uGUGUCGCCGUUuaCGGCGgCGGuuG- -5'
29852 3' -56.7 NC_006273.1 + 38150 0.72 0.625261
Target:  5'- cGCGCAGaaaGuGCGAcagcuCCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUCg--C-CGUUuac--GGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 49374 0.79 0.286771
Target:  5'- -gGCAGCGGCGguAGUGCC-CUGCCGACc -3'
miRNA:   3'- ugUGUCGCCGU--UUACGGcGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 175546 0.7 0.724763
Target:  5'- aACugGGCGcGUGAAaGCCGCaCGCCAc- -3'
miRNA:   3'- -UGugUCGC-CGUUUaCGGCG-GCGGUug -5'
29852 3' -56.7 NC_006273.1 + 90291 0.78 0.321218
Target:  5'- cCGCAgGUGGUGAucagcGCCGCCGCCAGCg -3'
miRNA:   3'- uGUGU-CGCCGUUua---CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 101989 0.71 0.715018
Target:  5'- cGCGCGGCGGCGGAggauCCaagGCCuCCAGCg -3'
miRNA:   3'- -UGUGUCGCCGUUUac--GG---CGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 145673 0.71 0.705205
Target:  5'- gGCGCGGCGGuCGcAUGCUgGgCGCUAGCg -3'
miRNA:   3'- -UGUGUCGCC-GUuUACGG-CgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 153024 0.71 0.695333
Target:  5'- -gACAGCGGCGuuuGUGCacgcaGCCGCUg-- -3'
miRNA:   3'- ugUGUCGCCGUu--UACGg----CGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 81598 0.71 0.675443
Target:  5'- -gGCGGCGGCcGcgGCCGCgGCgGAg -3'
miRNA:   3'- ugUGUCGCCGuUuaCGGCGgCGgUUg -5'
29852 3' -56.7 NC_006273.1 + 105811 0.72 0.655416
Target:  5'- gGCAUAGCGGa----GCCGCCGaCGACu -3'
miRNA:   3'- -UGUGUCGCCguuuaCGGCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 98206 0.72 0.645372
Target:  5'- cGCugAGCGGCAGcgGCgGCaCcCCGGCu -3'
miRNA:   3'- -UGugUCGCCGUUuaCGgCG-GcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 173803 0.73 0.59515
Target:  5'- cGCGCGGUGGCcaAAcgGCCGCgcgacccgGCCGACg -3'
miRNA:   3'- -UGUGUCGCCG--UUuaCGGCGg-------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 193322 0.73 0.575194
Target:  5'- aACGuCAGCaGCAAccGCCGCCcCCGACa -3'
miRNA:   3'- -UGU-GUCGcCGUUuaCGGCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 167257 0.74 0.5358
Target:  5'- gGCGCAGCGaGCGAucuaGCCGCuCGCUAGu -3'
miRNA:   3'- -UGUGUCGC-CGUUua--CGGCG-GCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 154925 0.74 0.516453
Target:  5'- ---aAGCGGCAGuacGCCGCCGCCu-- -3'
miRNA:   3'- ugugUCGCCGUUua-CGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 48044 0.75 0.478653
Target:  5'- gACAUGGCGGUGAcggcGCCGCUGaCCGACg -3'
miRNA:   3'- -UGUGUCGCCGUUua--CGGCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 12401 0.76 0.433412
Target:  5'- cUACGGCGaGCAGAUgcgcacGCCGCUGCUAACc -3'
miRNA:   3'- uGUGUCGC-CGUUUA------CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 85790 0.77 0.358668
Target:  5'- -gGCAGCGGCAucuaGaCCGCCGCCAcucGCg -3'
miRNA:   3'- ugUGUCGCCGUuua-C-GGCGGCGGU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.