miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 173356 0.66 0.956325
Target:  5'- -cG-CGGUGCCGCCGCUCugUUcggCUa -3'
miRNA:   3'- gaCaGCUGCGGCGGCGAGugAAa--GGa -5'
29852 5' -56.4 NC_006273.1 + 151789 0.66 0.956325
Target:  5'- -cGUCG-CGCgCGCCcagGCUCAUggagUCCUc -3'
miRNA:   3'- gaCAGCuGCG-GCGG---CGAGUGaa--AGGA- -5'
29852 5' -56.4 NC_006273.1 + 139870 0.66 0.956325
Target:  5'- gCUGUCGGCgcagucuccgGCCGCCGauuuCUCGgUcUCCg -3'
miRNA:   3'- -GACAGCUG----------CGGCGGC----GAGUgAaAGGa -5'
29852 5' -56.4 NC_006273.1 + 201964 0.66 0.955211
Target:  5'- gCUGUCGcGCGCCGCCGacgcccgaggcggugCGCg-UCCa -3'
miRNA:   3'- -GACAGC-UGCGGCGGCga-------------GUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 177554 0.66 0.952536
Target:  5'- uUGUUGGUGCCGCCGCg-ACggUUCUg -3'
miRNA:   3'- gACAGCUGCGGCGGCGagUGaaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 89364 0.66 0.952536
Target:  5'- gUGUCGG-GCCGCgGCagUCGCUUagCCa -3'
miRNA:   3'- gACAGCUgCGGCGgCG--AGUGAAa-GGa -5'
29852 5' -56.4 NC_006273.1 + 38315 0.66 0.948532
Target:  5'- cCUGUUGAcCGUCGCCGUgucgUCGCcg-CCa -3'
miRNA:   3'- -GACAGCU-GCGGCGGCG----AGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 93178 0.66 0.948532
Target:  5'- -cGUCcaccGCGgaCGCCGCUCACgcugUCCg -3'
miRNA:   3'- gaCAGc---UGCg-GCGGCGAGUGaa--AGGa -5'
29852 5' -56.4 NC_006273.1 + 133313 0.66 0.94431
Target:  5'- gUGUgGcCGCCGCUGCUCGagcaCCUc -3'
miRNA:   3'- gACAgCuGCGGCGGCGAGUgaaaGGA- -5'
29852 5' -56.4 NC_006273.1 + 156444 0.66 0.939868
Target:  5'- -aGUCGACGgCGUCGCUCcguGCggUCg- -3'
miRNA:   3'- gaCAGCUGCgGCGGCGAG---UGaaAGga -5'
29852 5' -56.4 NC_006273.1 + 194719 0.66 0.938492
Target:  5'- gCUGagGACGCCGaCgCGCUUACUUaugucacgcaacacUCCc -3'
miRNA:   3'- -GACagCUGCGGC-G-GCGAGUGAA--------------AGGa -5'
29852 5' -56.4 NC_006273.1 + 234657 0.66 0.938492
Target:  5'- gCUGagGACGCCGaCgCGCUUACUUaugucacgcaacacUCCc -3'
miRNA:   3'- -GACagCUGCGGC-G-GCGAGUGAA--------------AGGa -5'
29852 5' -56.4 NC_006273.1 + 101958 0.67 0.935204
Target:  5'- -cGUgCGcGCGCCGUCGCgUCGCUUgacggCCa -3'
miRNA:   3'- gaCA-GC-UGCGGCGGCG-AGUGAAa----GGa -5'
29852 5' -56.4 NC_006273.1 + 25416 0.67 0.935204
Target:  5'- -gGUCGACuGuuGCCGCguggCGCUgcacaCCUa -3'
miRNA:   3'- gaCAGCUG-CggCGGCGa---GUGAaa---GGA- -5'
29852 5' -56.4 NC_006273.1 + 97364 0.67 0.930317
Target:  5'- -cGcCGGCGCCGCCuaGCgUCACUgccUUCUg -3'
miRNA:   3'- gaCaGCUGCGGCGG--CG-AGUGA---AAGGa -5'
29852 5' -56.4 NC_006273.1 + 71749 0.67 0.930317
Target:  5'- ----gGGCGCCGUC-UUCGCUUUCCa -3'
miRNA:   3'- gacagCUGCGGCGGcGAGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 113516 0.67 0.930317
Target:  5'- aUGUCGaucuauguguacGCGCUGCCGCUCAagaugCUg -3'
miRNA:   3'- gACAGC------------UGCGGCGGCGAGUgaaa-GGa -5'
29852 5' -56.4 NC_006273.1 + 55548 0.67 0.925205
Target:  5'- uCUGUCGACGCUaGCCGCgacuaugugCAUgUUCg- -3'
miRNA:   3'- -GACAGCUGCGG-CGGCGa--------GUGaAAGga -5'
29852 5' -56.4 NC_006273.1 + 183789 0.67 0.924682
Target:  5'- gUGUCGGaagaagaccccgcUGCCGCCGC-CACcccUCCg -3'
miRNA:   3'- gACAGCU-------------GCGGCGGCGaGUGaa-AGGa -5'
29852 5' -56.4 NC_006273.1 + 65057 0.67 0.91987
Target:  5'- aUGUCacaACGCCGCCGUguaUCACUgcgagggucUCCa -3'
miRNA:   3'- gACAGc--UGCGGCGGCG---AGUGAa--------AGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.