Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 211022 | 0.69 | 0.862038 |
Target: 5'- gCUGUCGAacaGCCGCCGaaaCACgaUCUg -3' miRNA: 3'- -GACAGCUg--CGGCGGCga-GUGaaAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 128756 | 0.69 | 0.854581 |
Target: 5'- -cGUCGccauuacCGUCGCCGCUCAaagUUCCc -3' miRNA: 3'- gaCAGCu------GCGGCGGCGAGUga-AAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 1851 | 0.69 | 0.846936 |
Target: 5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3' miRNA: 3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 170114 | 0.69 | 0.839109 |
Target: 5'- -gGUCGuuguCGCUGCCGUguccgCGCUUUCUc -3' miRNA: 3'- gaCAGCu---GCGGCGGCGa----GUGAAAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 92464 | 0.69 | 0.862038 |
Target: 5'- gCUGUCGAUGCaCGCCaGCUucCACUggUCg -3' miRNA: 3'- -GACAGCUGCG-GCGG-CGA--GUGAaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 196743 | 0.69 | 0.846936 |
Target: 5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3' miRNA: 3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 68065 | 0.7 | 0.822931 |
Target: 5'- -cGcCGugGCCGCCGCUgccgcCGCUguggCCg -3' miRNA: 3'- gaCaGCugCGGCGGCGA-----GUGAaa--GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 213189 | 0.7 | 0.788684 |
Target: 5'- gUGUCGcccAUGCUGCCGCUUACga-CCg -3' miRNA: 3'- gACAGC---UGCGGCGGCGAGUGaaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 88848 | 0.7 | 0.806103 |
Target: 5'- gUGUCG-CGCCGuCCGCU-ACUUUCg- -3' miRNA: 3'- gACAGCuGCGGC-GGCGAgUGAAAGga -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 171695 | 0.7 | 0.779773 |
Target: 5'- aCUGcCGGCGCUGCUGCgcaUCACg-UCCUc -3' miRNA: 3'- -GACaGCUGCGGCGGCG---AGUGaaAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 67741 | 0.7 | 0.779773 |
Target: 5'- -cGUUG-CgGCCGCCGCUCACagUCUa -3' miRNA: 3'- gaCAGCuG-CGGCGGCGAGUGaaAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 121650 | 0.7 | 0.797464 |
Target: 5'- ---aCGGCGCCGCCGCcgUCGCcaccUCCg -3' miRNA: 3'- gacaGCUGCGGCGGCG--AGUGaa--AGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 56657 | 0.71 | 0.74297 |
Target: 5'- -gGUCGugaucacCGCCGCCGCcaccgcugcUCAUUUUCCg -3' miRNA: 3'- gaCAGCu------GCGGCGGCG---------AGUGAAAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 35072 | 0.71 | 0.74297 |
Target: 5'- ---aCGACGCCcccguGCCGCUCACgcuaUCCa -3' miRNA: 3'- gacaGCUGCGG-----CGGCGAGUGaa--AGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 124460 | 0.71 | 0.770738 |
Target: 5'- -cGcCGACGCUG-CGCUCGCggUCCa -3' miRNA: 3'- gaCaGCUGCGGCgGCGAGUGaaAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 117470 | 0.71 | 0.770738 |
Target: 5'- -cGaCGACGCCGCCGCgg--UUUCCUu -3' miRNA: 3'- gaCaGCUGCGGCGGCGagugAAAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 198654 | 0.71 | 0.74297 |
Target: 5'- -gGcCGAgcugUGCCGCCGCUCGCgcgCCUc -3' miRNA: 3'- gaCaGCU----GCGGCGGCGAGUGaaaGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 181340 | 0.72 | 0.708589 |
Target: 5'- cCUGUCGAgacgacgguaacaacCGCCGgcgugacguCCGCUCACggUCCg -3' miRNA: 3'- -GACAGCU---------------GCGGC---------GGCGAGUGaaAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 208005 | 0.72 | 0.685207 |
Target: 5'- uUGUCGGCGUCGCUGCUgACgaacgcgUCUg -3' miRNA: 3'- gACAGCUGCGGCGGCGAgUGaa-----AGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 136704 | 0.73 | 0.635859 |
Target: 5'- -gGUCGcCGCCGCCGCgguugcuaUACUUUCUUa -3' miRNA: 3'- gaCAGCuGCGGCGGCGa-------GUGAAAGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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