Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 29852 | 5' | -56.4 | NC_006273.1 | + | 136704 | 0.73 | 0.635859 |
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Target: 5'- -gGUCGcCGCCGCCGCgguugcuaUACUUUCUUa -3' miRNA: 3'- gaCAGCuGCGGCGGCGa-------GUGAAAGGA- -5' |
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| 29852 | 5' | -56.4 | NC_006273.1 | + | 119984 | 0.73 | 0.665536 |
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Target: 5'- gCUGcCGuacaGCGCCGCCGCUCAUaaugCCg -3' miRNA: 3'- -GACaGC----UGCGGCGGCGAGUGaaa-GGa -5' |
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| 29852 | 5' | -56.4 | NC_006273.1 | + | 198144 | 0.75 | 0.528194 |
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Target: 5'- -cGUCGuCGCCGCCGUcgCGCcUUCCUc -3' miRNA: 3'- gaCAGCuGCGGCGGCGa-GUGaAAGGA- -5' |
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| 29852 | 5' | -56.4 | NC_006273.1 | + | 162995 | 0.76 | 0.489647 |
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Target: 5'- -cGUCGACGUCGCCGUcgUCACUUcuuucgcUCCc -3' miRNA: 3'- gaCAGCUGCGGCGGCG--AGUGAA-------AGGa -5' |
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| 29852 | 5' | -56.4 | NC_006273.1 | + | 38313 | 0.8 | 0.311288 |
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Target: 5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3' miRNA: 3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5' |
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| 29852 | 5' | -56.4 | NC_006273.1 | + | 233206 | 0.8 | 0.311288 |
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Target: 5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3' miRNA: 3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5' |
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| 29852 | 5' | -56.4 | NC_006273.1 | + | 191483 | 0.83 | 0.210164 |
|
Target: 5'- -aGUCGGCGCCGCCGC-CGCUUggaCCUu -3' miRNA: 3'- gaCAGCUGCGGCGGCGaGUGAAa--GGA- -5' |
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| 29852 | 5' | -56.4 | NC_006273.1 | + | 111284 | 1.07 | 0.006035 |
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Target: 5'- uCUGUCGACGCCGCCGCUCACUUUCCUc -3' miRNA: 3'- -GACAGCUGCGGCGGCGAGUGAAAGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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