Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 68065 | 0.7 | 0.822931 |
Target: 5'- -cGcCGugGCCGCCGCUgccgcCGCUguggCCg -3' miRNA: 3'- gaCaGCugCGGCGGCGA-----GUGAaa--GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 88848 | 0.7 | 0.806103 |
Target: 5'- gUGUCG-CGCCGuCCGCU-ACUUUCg- -3' miRNA: 3'- gACAGCuGCGGC-GGCGAgUGAAAGga -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 92464 | 0.69 | 0.862038 |
Target: 5'- gCUGUCGAUGCaCGCCaGCUucCACUggUCg -3' miRNA: 3'- -GACAGCUGCG-GCGG-CGA--GUGAaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 211022 | 0.69 | 0.862038 |
Target: 5'- gCUGUCGAacaGCCGCCGaaaCACgaUCUg -3' miRNA: 3'- -GACAGCUg--CGGCGGCga-GUGaaAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 196743 | 0.69 | 0.846936 |
Target: 5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3' miRNA: 3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 128756 | 0.69 | 0.854581 |
Target: 5'- -cGUCGccauuacCGUCGCCGCUCAaagUUCCc -3' miRNA: 3'- gaCAGCu------GCGGCGGCGAGUga-AAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 202615 | 0.69 | 0.862038 |
Target: 5'- uUGUgGugcGCGCCGCCGaCUCGCUg-CCg -3' miRNA: 3'- gACAgC---UGCGGCGGC-GAGUGAaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 170114 | 0.69 | 0.839109 |
Target: 5'- -gGUCGuuguCGCUGCCGUguccgCGCUUUCUc -3' miRNA: 3'- gaCAGCu---GCGGCGGCGa----GUGAAAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 1851 | 0.69 | 0.846936 |
Target: 5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3' miRNA: 3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 97236 | 0.68 | 0.88322 |
Target: 5'- -gGcCGugGCCGCCGC-CAUgagCCg -3' miRNA: 3'- gaCaGCugCGGCGGCGaGUGaaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 98808 | 0.68 | 0.88322 |
Target: 5'- ---cUGcCGCCGCCGUUCGCggaggaggUUCCUg -3' miRNA: 3'- gacaGCuGCGGCGGCGAGUGa-------AAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 166575 | 0.68 | 0.88322 |
Target: 5'- -cG-CGGCGCCGCCGgCUaCGCguccgggUUCCa -3' miRNA: 3'- gaCaGCUGCGGCGGC-GA-GUGa------AAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 135540 | 0.68 | 0.889869 |
Target: 5'- aUGaUCGcCGCCGCCGCUC-CUcccgCCc -3' miRNA: 3'- gAC-AGCuGCGGCGGCGAGuGAaa--GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 133965 | 0.68 | 0.896306 |
Target: 5'- -cGUCGGCGCCGCCucGCaucaUCACcgacCCUg -3' miRNA: 3'- gaCAGCUGCGGCGG--CG----AGUGaaa-GGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 81806 | 0.68 | 0.902527 |
Target: 5'- -gGUC-ACGCCGCCGCUCAg------ -3' miRNA: 3'- gaCAGcUGCGGCGGCGAGUgaaagga -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 82542 | 0.68 | 0.8693 |
Target: 5'- -cG-CGGCGCCcagGCCGCUCAUgaggucgUCCa -3' miRNA: 3'- gaCaGCUGCGG---CGGCGAGUGaa-----AGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 38347 | 0.68 | 0.88322 |
Target: 5'- -cGUCGuCGCCGCUGC-CGCUcgUCa -3' miRNA: 3'- gaCAGCuGCGGCGGCGaGUGAaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 1863 | 0.68 | 0.889869 |
Target: 5'- -cGUCGuACGCUGCCGCggaacagGCUUUCg- -3' miRNA: 3'- gaCAGC-UGCGGCGGCGag-----UGAAAGga -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 118983 | 0.68 | 0.896306 |
Target: 5'- -aGUCcuCGUCGCCGCUgGCU-UCCUc -3' miRNA: 3'- gaCAGcuGCGGCGGCGAgUGAaAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 213079 | 0.68 | 0.88322 |
Target: 5'- -cGUUGGCGCCGCUGC-CGCg--UCg -3' miRNA: 3'- gaCAGCUGCGGCGGCGaGUGaaaGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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