miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 111284 1.07 0.006035
Target:  5'- uCUGUCGACGCCGCCGCUCACUUUCCUc -3'
miRNA:   3'- -GACAGCUGCGGCGGCGAGUGAAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 191483 0.83 0.210164
Target:  5'- -aGUCGGCGCCGCCGC-CGCUUggaCCUu -3'
miRNA:   3'- gaCAGCUGCGGCGGCGaGUGAAa--GGA- -5'
29852 5' -56.4 NC_006273.1 + 233206 0.8 0.311288
Target:  5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3'
miRNA:   3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 38313 0.8 0.311288
Target:  5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3'
miRNA:   3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 162995 0.76 0.489647
Target:  5'- -cGUCGACGUCGCCGUcgUCACUUcuuucgcUCCc -3'
miRNA:   3'- gaCAGCUGCGGCGGCG--AGUGAA-------AGGa -5'
29852 5' -56.4 NC_006273.1 + 198144 0.75 0.528194
Target:  5'- -cGUCGuCGCCGCCGUcgCGCcUUCCUc -3'
miRNA:   3'- gaCAGCuGCGGCGGCGa-GUGaAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 133647 0.73 0.615058
Target:  5'- -cGcCGGCGaCCGCCGUcugagccUCACUUUCCa -3'
miRNA:   3'- gaCaGCUGC-GGCGGCG-------AGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 136704 0.73 0.635859
Target:  5'- -gGUCGcCGCCGCCGCgguugcuaUACUUUCUUa -3'
miRNA:   3'- gaCAGCuGCGGCGGCGa-------GUGAAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 119984 0.73 0.665536
Target:  5'- gCUGcCGuacaGCGCCGCCGCUCAUaaugCCg -3'
miRNA:   3'- -GACaGC----UGCGGCGGCGAGUGaaa-GGa -5'
29852 5' -56.4 NC_006273.1 + 208005 0.72 0.685207
Target:  5'- uUGUCGGCGUCGCUGCUgACgaacgcgUCUg -3'
miRNA:   3'- gACAGCUGCGGCGGCGAgUGaa-----AGGa -5'
29852 5' -56.4 NC_006273.1 + 181340 0.72 0.708589
Target:  5'- cCUGUCGAgacgacgguaacaacCGCCGgcgugacguCCGCUCACggUCCg -3'
miRNA:   3'- -GACAGCU---------------GCGGC---------GGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 35072 0.71 0.74297
Target:  5'- ---aCGACGCCcccguGCCGCUCACgcuaUCCa -3'
miRNA:   3'- gacaGCUGCGG-----CGGCGAGUGaa--AGGa -5'
29852 5' -56.4 NC_006273.1 + 56657 0.71 0.74297
Target:  5'- -gGUCGugaucacCGCCGCCGCcaccgcugcUCAUUUUCCg -3'
miRNA:   3'- gaCAGCu------GCGGCGGCG---------AGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 198654 0.71 0.74297
Target:  5'- -gGcCGAgcugUGCCGCCGCUCGCgcgCCUc -3'
miRNA:   3'- gaCaGCU----GCGGCGGCGAGUGaaaGGA- -5'
29852 5' -56.4 NC_006273.1 + 117470 0.71 0.770738
Target:  5'- -cGaCGACGCCGCCGCgg--UUUCCUu -3'
miRNA:   3'- gaCaGCUGCGGCGGCGagugAAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 124460 0.71 0.770738
Target:  5'- -cGcCGACGCUG-CGCUCGCggUCCa -3'
miRNA:   3'- gaCaGCUGCGGCgGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 171695 0.7 0.779773
Target:  5'- aCUGcCGGCGCUGCUGCgcaUCACg-UCCUc -3'
miRNA:   3'- -GACaGCUGCGGCGGCG---AGUGaaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 67741 0.7 0.779773
Target:  5'- -cGUUG-CgGCCGCCGCUCACagUCUa -3'
miRNA:   3'- gaCAGCuG-CGGCGGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 213189 0.7 0.788684
Target:  5'- gUGUCGcccAUGCUGCCGCUUACga-CCg -3'
miRNA:   3'- gACAGC---UGCGGCGGCGAGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 121650 0.7 0.797464
Target:  5'- ---aCGGCGCCGCCGCcgUCGCcaccUCCg -3'
miRNA:   3'- gacaGCUGCGGCGGCG--AGUGaa--AGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.