miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 88848 0.7 0.806103
Target:  5'- gUGUCG-CGCCGuCCGCU-ACUUUCg- -3'
miRNA:   3'- gACAGCuGCGGC-GGCGAgUGAAAGga -5'
29852 5' -56.4 NC_006273.1 + 68065 0.7 0.822931
Target:  5'- -cGcCGugGCCGCCGCUgccgcCGCUguggCCg -3'
miRNA:   3'- gaCaGCugCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 170114 0.69 0.839109
Target:  5'- -gGUCGuuguCGCUGCCGUguccgCGCUUUCUc -3'
miRNA:   3'- gaCAGCu---GCGGCGGCGa----GUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 1851 0.69 0.846936
Target:  5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3'
miRNA:   3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5'
29852 5' -56.4 NC_006273.1 + 196743 0.69 0.846936
Target:  5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3'
miRNA:   3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5'
29852 5' -56.4 NC_006273.1 + 128756 0.69 0.854581
Target:  5'- -cGUCGccauuacCGUCGCCGCUCAaagUUCCc -3'
miRNA:   3'- gaCAGCu------GCGGCGGCGAGUga-AAGGa -5'
29852 5' -56.4 NC_006273.1 + 211022 0.69 0.862038
Target:  5'- gCUGUCGAacaGCCGCCGaaaCACgaUCUg -3'
miRNA:   3'- -GACAGCUg--CGGCGGCga-GUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 202615 0.69 0.862038
Target:  5'- uUGUgGugcGCGCCGCCGaCUCGCUg-CCg -3'
miRNA:   3'- gACAgC---UGCGGCGGC-GAGUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 92464 0.69 0.862038
Target:  5'- gCUGUCGAUGCaCGCCaGCUucCACUggUCg -3'
miRNA:   3'- -GACAGCUGCG-GCGG-CGA--GUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 82542 0.68 0.8693
Target:  5'- -cG-CGGCGCCcagGCCGCUCAUgaggucgUCCa -3'
miRNA:   3'- gaCaGCUGCGG---CGGCGAGUGaa-----AGGa -5'
29852 5' -56.4 NC_006273.1 + 166575 0.68 0.88322
Target:  5'- -cG-CGGCGCCGCCGgCUaCGCguccgggUUCCa -3'
miRNA:   3'- gaCaGCUGCGGCGGC-GA-GUGa------AAGGa -5'
29852 5' -56.4 NC_006273.1 + 98808 0.68 0.88322
Target:  5'- ---cUGcCGCCGCCGUUCGCggaggaggUUCCUg -3'
miRNA:   3'- gacaGCuGCGGCGGCGAGUGa-------AAGGA- -5'
29852 5' -56.4 NC_006273.1 + 97236 0.68 0.88322
Target:  5'- -gGcCGugGCCGCCGC-CAUgagCCg -3'
miRNA:   3'- gaCaGCugCGGCGGCGaGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 38347 0.68 0.88322
Target:  5'- -cGUCGuCGCCGCUGC-CGCUcgUCa -3'
miRNA:   3'- gaCAGCuGCGGCGGCGaGUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 213079 0.68 0.88322
Target:  5'- -cGUUGGCGCCGCUGC-CGCg--UCg -3'
miRNA:   3'- gaCAGCUGCGGCGGCGaGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 1863 0.68 0.889869
Target:  5'- -cGUCGuACGCUGCCGCggaacagGCUUUCg- -3'
miRNA:   3'- gaCAGC-UGCGGCGGCGag-----UGAAAGga -5'
29852 5' -56.4 NC_006273.1 + 135540 0.68 0.889869
Target:  5'- aUGaUCGcCGCCGCCGCUC-CUcccgCCc -3'
miRNA:   3'- gAC-AGCuGCGGCGGCGAGuGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 118983 0.68 0.896306
Target:  5'- -aGUCcuCGUCGCCGCUgGCU-UCCUc -3'
miRNA:   3'- gaCAGcuGCGGCGGCGAgUGAaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 133965 0.68 0.896306
Target:  5'- -cGUCGGCGCCGCCucGCaucaUCACcgacCCUg -3'
miRNA:   3'- gaCAGCUGCGGCGG--CG----AGUGaaa-GGA- -5'
29852 5' -56.4 NC_006273.1 + 81806 0.68 0.902527
Target:  5'- -gGUC-ACGCCGCCGCUCAg------ -3'
miRNA:   3'- gaCAGcUGCGGCGGCGAGUgaaagga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.