miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 81806 0.68 0.902527
Target:  5'- -gGUC-ACGCCGCCGCUCAg------ -3'
miRNA:   3'- gaCAGcUGCGGCGGCGAGUgaaagga -5'
29852 5' -56.4 NC_006273.1 + 150829 0.67 0.908529
Target:  5'- ---aCGACGuCUGCUGCUCACUcucgaUCCg -3'
miRNA:   3'- gacaGCUGC-GGCGGCGAGUGAa----AGGa -5'
29852 5' -56.4 NC_006273.1 + 141776 0.67 0.908529
Target:  5'- gCUG-CGcAgGCCGCCGCUCAag--CCg -3'
miRNA:   3'- -GACaGC-UgCGGCGGCGAGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 169449 0.67 0.908529
Target:  5'- -aGUa-ACGCUGCCGUUCACguaggUUCCc -3'
miRNA:   3'- gaCAgcUGCGGCGGCGAGUGa----AAGGa -5'
29852 5' -56.4 NC_006273.1 + 214986 0.67 0.914311
Target:  5'- aCUGgggCGACGCCGCUGCUguggcaGCga-CCg -3'
miRNA:   3'- -GACa--GCUGCGGCGGCGAg-----UGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 197295 0.67 0.914311
Target:  5'- -aGUCGGCGcCCGCCGC-CGagg-CCg -3'
miRNA:   3'- gaCAGCUGC-GGCGGCGaGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 2402 0.67 0.914311
Target:  5'- -aGUCGGCGcCCGCCGC-CGagg-CCg -3'
miRNA:   3'- gaCAGCUGC-GGCGGCGaGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 118393 0.67 0.914311
Target:  5'- gUGUCGuguuaGCCGCCGCU-GCUgcCCa -3'
miRNA:   3'- gACAGCug---CGGCGGCGAgUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 65057 0.67 0.91987
Target:  5'- aUGUCacaACGCCGCCGUguaUCACUgcgagggucUCCa -3'
miRNA:   3'- gACAGc--UGCGGCGGCG---AGUGAa--------AGGa -5'
29852 5' -56.4 NC_006273.1 + 183789 0.67 0.924682
Target:  5'- gUGUCGGaagaagaccccgcUGCCGCCGC-CACcccUCCg -3'
miRNA:   3'- gACAGCU-------------GCGGCGGCGaGUGaa-AGGa -5'
29852 5' -56.4 NC_006273.1 + 55548 0.67 0.925205
Target:  5'- uCUGUCGACGCUaGCCGCgacuaugugCAUgUUCg- -3'
miRNA:   3'- -GACAGCUGCGG-CGGCGa--------GUGaAAGga -5'
29852 5' -56.4 NC_006273.1 + 97364 0.67 0.930317
Target:  5'- -cGcCGGCGCCGCCuaGCgUCACUgccUUCUg -3'
miRNA:   3'- gaCaGCUGCGGCGG--CG-AGUGA---AAGGa -5'
29852 5' -56.4 NC_006273.1 + 113516 0.67 0.930317
Target:  5'- aUGUCGaucuauguguacGCGCUGCCGCUCAagaugCUg -3'
miRNA:   3'- gACAGC------------UGCGGCGGCGAGUgaaa-GGa -5'
29852 5' -56.4 NC_006273.1 + 71749 0.67 0.930317
Target:  5'- ----gGGCGCCGUC-UUCGCUUUCCa -3'
miRNA:   3'- gacagCUGCGGCGGcGAGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 101958 0.67 0.935204
Target:  5'- -cGUgCGcGCGCCGUCGCgUCGCUUgacggCCa -3'
miRNA:   3'- gaCA-GC-UGCGGCGGCG-AGUGAAa----GGa -5'
29852 5' -56.4 NC_006273.1 + 25416 0.67 0.935204
Target:  5'- -gGUCGACuGuuGCCGCguggCGCUgcacaCCUa -3'
miRNA:   3'- gaCAGCUG-CggCGGCGa---GUGAaa---GGA- -5'
29852 5' -56.4 NC_006273.1 + 194719 0.66 0.938492
Target:  5'- gCUGagGACGCCGaCgCGCUUACUUaugucacgcaacacUCCc -3'
miRNA:   3'- -GACagCUGCGGC-G-GCGAGUGAA--------------AGGa -5'
29852 5' -56.4 NC_006273.1 + 234657 0.66 0.938492
Target:  5'- gCUGagGACGCCGaCgCGCUUACUUaugucacgcaacacUCCc -3'
miRNA:   3'- -GACagCUGCGGC-G-GCGAGUGAA--------------AGGa -5'
29852 5' -56.4 NC_006273.1 + 156444 0.66 0.939868
Target:  5'- -aGUCGACGgCGUCGCUCcguGCggUCg- -3'
miRNA:   3'- gaCAGCUGCgGCGGCGAG---UGaaAGga -5'
29852 5' -56.4 NC_006273.1 + 133313 0.66 0.94431
Target:  5'- gUGUgGcCGCCGCUGCUCGagcaCCUc -3'
miRNA:   3'- gACAgCuGCGGCGGCGAGUgaaaGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.