Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 2402 | 0.67 | 0.914311 |
Target: 5'- -aGUCGGCGcCCGCCGC-CGagg-CCg -3' miRNA: 3'- gaCAGCUGC-GGCGGCGaGUgaaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 214986 | 0.67 | 0.914311 |
Target: 5'- aCUGgggCGACGCCGCUGCUguggcaGCga-CCg -3' miRNA: 3'- -GACa--GCUGCGGCGGCGAg-----UGaaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 197295 | 0.67 | 0.914311 |
Target: 5'- -aGUCGGCGcCCGCCGC-CGagg-CCg -3' miRNA: 3'- gaCAGCUGC-GGCGGCGaGUgaaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 118393 | 0.67 | 0.914311 |
Target: 5'- gUGUCGuguuaGCCGCCGCU-GCUgcCCa -3' miRNA: 3'- gACAGCug---CGGCGGCGAgUGAaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 141776 | 0.67 | 0.908529 |
Target: 5'- gCUG-CGcAgGCCGCCGCUCAag--CCg -3' miRNA: 3'- -GACaGC-UgCGGCGGCGAGUgaaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 169449 | 0.67 | 0.908529 |
Target: 5'- -aGUa-ACGCUGCCGUUCACguaggUUCCc -3' miRNA: 3'- gaCAgcUGCGGCGGCGAGUGa----AAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 150829 | 0.67 | 0.908529 |
Target: 5'- ---aCGACGuCUGCUGCUCACUcucgaUCCg -3' miRNA: 3'- gacaGCUGC-GGCGGCGAGUGAa----AGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 158362 | 0.68 | 0.902527 |
Target: 5'- -cGUCGuucgcgcggcguGCGCaCGCCGCUCACg--CUa -3' miRNA: 3'- gaCAGC------------UGCG-GCGGCGAGUGaaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 81806 | 0.68 | 0.902527 |
Target: 5'- -gGUC-ACGCCGCCGCUCAg------ -3' miRNA: 3'- gaCAGcUGCGGCGGCGAGUgaaagga -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 118983 | 0.68 | 0.896306 |
Target: 5'- -aGUCcuCGUCGCCGCUgGCU-UCCUc -3' miRNA: 3'- gaCAGcuGCGGCGGCGAgUGAaAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 133965 | 0.68 | 0.896306 |
Target: 5'- -cGUCGGCGCCGCCucGCaucaUCACcgacCCUg -3' miRNA: 3'- gaCAGCUGCGGCGG--CG----AGUGaaa-GGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 1863 | 0.68 | 0.889869 |
Target: 5'- -cGUCGuACGCUGCCGCggaacagGCUUUCg- -3' miRNA: 3'- gaCAGC-UGCGGCGGCGag-----UGAAAGga -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 135540 | 0.68 | 0.889869 |
Target: 5'- aUGaUCGcCGCCGCCGCUC-CUcccgCCc -3' miRNA: 3'- gAC-AGCuGCGGCGGCGAGuGAaa--GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 213079 | 0.68 | 0.88322 |
Target: 5'- -cGUUGGCGCCGCUGC-CGCg--UCg -3' miRNA: 3'- gaCAGCUGCGGCGGCGaGUGaaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 166575 | 0.68 | 0.88322 |
Target: 5'- -cG-CGGCGCCGCCGgCUaCGCguccgggUUCCa -3' miRNA: 3'- gaCaGCUGCGGCGGC-GA-GUGa------AAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 98808 | 0.68 | 0.88322 |
Target: 5'- ---cUGcCGCCGCCGUUCGCggaggaggUUCCUg -3' miRNA: 3'- gacaGCuGCGGCGGCGAGUGa-------AAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 97236 | 0.68 | 0.88322 |
Target: 5'- -gGcCGugGCCGCCGC-CAUgagCCg -3' miRNA: 3'- gaCaGCugCGGCGGCGaGUGaaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 38347 | 0.68 | 0.88322 |
Target: 5'- -cGUCGuCGCCGCUGC-CGCUcgUCa -3' miRNA: 3'- gaCAGCuGCGGCGGCGaGUGAaaGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 82542 | 0.68 | 0.8693 |
Target: 5'- -cG-CGGCGCCcagGCCGCUCAUgaggucgUCCa -3' miRNA: 3'- gaCaGCUGCGG---CGGCGAGUGaa-----AGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 211022 | 0.69 | 0.862038 |
Target: 5'- gCUGUCGAacaGCCGCCGaaaCACgaUCUg -3' miRNA: 3'- -GACAGCUg--CGGCGGCga-GUGaaAGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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