miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 1851 0.69 0.846936
Target:  5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3'
miRNA:   3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5'
29852 5' -56.4 NC_006273.1 + 1863 0.68 0.889869
Target:  5'- -cGUCGuACGCUGCCGCggaacagGCUUUCg- -3'
miRNA:   3'- gaCAGC-UGCGGCGGCGag-----UGAAAGga -5'
29852 5' -56.4 NC_006273.1 + 2402 0.67 0.914311
Target:  5'- -aGUCGGCGcCCGCCGC-CGagg-CCg -3'
miRNA:   3'- gaCAGCUGC-GGCGGCGaGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 25416 0.67 0.935204
Target:  5'- -gGUCGACuGuuGCCGCguggCGCUgcacaCCUa -3'
miRNA:   3'- gaCAGCUG-CggCGGCGa---GUGAaa---GGA- -5'
29852 5' -56.4 NC_006273.1 + 35072 0.71 0.74297
Target:  5'- ---aCGACGCCcccguGCCGCUCACgcuaUCCa -3'
miRNA:   3'- gacaGCUGCGG-----CGGCGAGUGaa--AGGa -5'
29852 5' -56.4 NC_006273.1 + 38313 0.8 0.311288
Target:  5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3'
miRNA:   3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 38315 0.66 0.948532
Target:  5'- cCUGUUGAcCGUCGCCGUgucgUCGCcg-CCa -3'
miRNA:   3'- -GACAGCU-GCGGCGGCG----AGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 38347 0.68 0.88322
Target:  5'- -cGUCGuCGCCGCUGC-CGCUcgUCa -3'
miRNA:   3'- gaCAGCuGCGGCGGCGaGUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 55548 0.67 0.925205
Target:  5'- uCUGUCGACGCUaGCCGCgacuaugugCAUgUUCg- -3'
miRNA:   3'- -GACAGCUGCGG-CGGCGa--------GUGaAAGga -5'
29852 5' -56.4 NC_006273.1 + 56657 0.71 0.74297
Target:  5'- -gGUCGugaucacCGCCGCCGCcaccgcugcUCAUUUUCCg -3'
miRNA:   3'- gaCAGCu------GCGGCGGCG---------AGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 65057 0.67 0.91987
Target:  5'- aUGUCacaACGCCGCCGUguaUCACUgcgagggucUCCa -3'
miRNA:   3'- gACAGc--UGCGGCGGCG---AGUGAa--------AGGa -5'
29852 5' -56.4 NC_006273.1 + 67741 0.7 0.779773
Target:  5'- -cGUUG-CgGCCGCCGCUCACagUCUa -3'
miRNA:   3'- gaCAGCuG-CGGCGGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 68065 0.7 0.822931
Target:  5'- -cGcCGugGCCGCCGCUgccgcCGCUguggCCg -3'
miRNA:   3'- gaCaGCugCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 71749 0.67 0.930317
Target:  5'- ----gGGCGCCGUC-UUCGCUUUCCa -3'
miRNA:   3'- gacagCUGCGGCGGcGAGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 81806 0.68 0.902527
Target:  5'- -gGUC-ACGCCGCCGCUCAg------ -3'
miRNA:   3'- gaCAGcUGCGGCGGCGAGUgaaagga -5'
29852 5' -56.4 NC_006273.1 + 82542 0.68 0.8693
Target:  5'- -cG-CGGCGCCcagGCCGCUCAUgaggucgUCCa -3'
miRNA:   3'- gaCaGCUGCGG---CGGCGAGUGaa-----AGGa -5'
29852 5' -56.4 NC_006273.1 + 88848 0.7 0.806103
Target:  5'- gUGUCG-CGCCGuCCGCU-ACUUUCg- -3'
miRNA:   3'- gACAGCuGCGGC-GGCGAgUGAAAGga -5'
29852 5' -56.4 NC_006273.1 + 89364 0.66 0.952536
Target:  5'- gUGUCGG-GCCGCgGCagUCGCUUagCCa -3'
miRNA:   3'- gACAGCUgCGGCGgCG--AGUGAAa-GGa -5'
29852 5' -56.4 NC_006273.1 + 92464 0.69 0.862038
Target:  5'- gCUGUCGAUGCaCGCCaGCUucCACUggUCg -3'
miRNA:   3'- -GACAGCUGCG-GCGG-CGA--GUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 93178 0.66 0.948532
Target:  5'- -cGUCcaccGCGgaCGCCGCUCACgcugUCCg -3'
miRNA:   3'- gaCAGc---UGCg-GCGGCGAGUGaa--AGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.