miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 150829 0.67 0.908529
Target:  5'- ---aCGACGuCUGCUGCUCACUcucgaUCCg -3'
miRNA:   3'- gacaGCUGC-GGCGGCGAGUGAa----AGGa -5'
29852 5' -56.4 NC_006273.1 + 151789 0.66 0.956325
Target:  5'- -cGUCG-CGCgCGCCcagGCUCAUggagUCCUc -3'
miRNA:   3'- gaCAGCuGCG-GCGG---CGAGUGaa--AGGA- -5'
29852 5' -56.4 NC_006273.1 + 156444 0.66 0.939868
Target:  5'- -aGUCGACGgCGUCGCUCcguGCggUCg- -3'
miRNA:   3'- gaCAGCUGCgGCGGCGAG---UGaaAGga -5'
29852 5' -56.4 NC_006273.1 + 158362 0.68 0.902527
Target:  5'- -cGUCGuucgcgcggcguGCGCaCGCCGCUCACg--CUa -3'
miRNA:   3'- gaCAGC------------UGCG-GCGGCGAGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 162995 0.76 0.489647
Target:  5'- -cGUCGACGUCGCCGUcgUCACUUcuuucgcUCCc -3'
miRNA:   3'- gaCAGCUGCGGCGGCG--AGUGAA-------AGGa -5'
29852 5' -56.4 NC_006273.1 + 166575 0.68 0.88322
Target:  5'- -cG-CGGCGCCGCCGgCUaCGCguccgggUUCCa -3'
miRNA:   3'- gaCaGCUGCGGCGGC-GA-GUGa------AAGGa -5'
29852 5' -56.4 NC_006273.1 + 169449 0.67 0.908529
Target:  5'- -aGUa-ACGCUGCCGUUCACguaggUUCCc -3'
miRNA:   3'- gaCAgcUGCGGCGGCGAGUGa----AAGGa -5'
29852 5' -56.4 NC_006273.1 + 170114 0.69 0.839109
Target:  5'- -gGUCGuuguCGCUGCCGUguccgCGCUUUCUc -3'
miRNA:   3'- gaCAGCu---GCGGCGGCGa----GUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 171695 0.7 0.779773
Target:  5'- aCUGcCGGCGCUGCUGCgcaUCACg-UCCUc -3'
miRNA:   3'- -GACaGCUGCGGCGGCG---AGUGaaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 173356 0.66 0.956325
Target:  5'- -cG-CGGUGCCGCCGCUCugUUcggCUa -3'
miRNA:   3'- gaCaGCUGCGGCGGCGAGugAAa--GGa -5'
29852 5' -56.4 NC_006273.1 + 177554 0.66 0.952536
Target:  5'- uUGUUGGUGCCGCCGCg-ACggUUCUg -3'
miRNA:   3'- gACAGCUGCGGCGGCGagUGaaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 181340 0.72 0.708589
Target:  5'- cCUGUCGAgacgacgguaacaacCGCCGgcgugacguCCGCUCACggUCCg -3'
miRNA:   3'- -GACAGCU---------------GCGGC---------GGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 183789 0.67 0.924682
Target:  5'- gUGUCGGaagaagaccccgcUGCCGCCGC-CACcccUCCg -3'
miRNA:   3'- gACAGCU-------------GCGGCGGCGaGUGaa-AGGa -5'
29852 5' -56.4 NC_006273.1 + 191483 0.83 0.210164
Target:  5'- -aGUCGGCGCCGCCGC-CGCUUggaCCUu -3'
miRNA:   3'- gaCAGCUGCGGCGGCGaGUGAAa--GGA- -5'
29852 5' -56.4 NC_006273.1 + 194719 0.66 0.938492
Target:  5'- gCUGagGACGCCGaCgCGCUUACUUaugucacgcaacacUCCc -3'
miRNA:   3'- -GACagCUGCGGC-G-GCGAGUGAA--------------AGGa -5'
29852 5' -56.4 NC_006273.1 + 196743 0.69 0.846936
Target:  5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3'
miRNA:   3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5'
29852 5' -56.4 NC_006273.1 + 197295 0.67 0.914311
Target:  5'- -aGUCGGCGcCCGCCGC-CGagg-CCg -3'
miRNA:   3'- gaCAGCUGC-GGCGGCGaGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 198144 0.75 0.528194
Target:  5'- -cGUCGuCGCCGCCGUcgCGCcUUCCUc -3'
miRNA:   3'- gaCAGCuGCGGCGGCGa-GUGaAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 198654 0.71 0.74297
Target:  5'- -gGcCGAgcugUGCCGCCGCUCGCgcgCCUc -3'
miRNA:   3'- gaCaGCU----GCGGCGGCGAGUGaaaGGA- -5'
29852 5' -56.4 NC_006273.1 + 201964 0.66 0.955211
Target:  5'- gCUGUCGcGCGCCGCCGacgcccgaggcggugCGCg-UCCa -3'
miRNA:   3'- -GACAGC-UGCGGCGGCga-------------GUGaaAGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.