Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 202615 | 0.69 | 0.862038 |
Target: 5'- uUGUgGugcGCGCCGCCGaCUCGCUg-CCg -3' miRNA: 3'- gACAgC---UGCGGCGGC-GAGUGAaaGGa -5' |
|||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 208005 | 0.72 | 0.685207 |
Target: 5'- uUGUCGGCGUCGCUGCUgACgaacgcgUCUg -3' miRNA: 3'- gACAGCUGCGGCGGCGAgUGaa-----AGGa -5' |
|||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 211022 | 0.69 | 0.862038 |
Target: 5'- gCUGUCGAacaGCCGCCGaaaCACgaUCUg -3' miRNA: 3'- -GACAGCUg--CGGCGGCga-GUGaaAGGa -5' |
|||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 213079 | 0.68 | 0.88322 |
Target: 5'- -cGUUGGCGCCGCUGC-CGCg--UCg -3' miRNA: 3'- gaCAGCUGCGGCGGCGaGUGaaaGGa -5' |
|||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 213189 | 0.7 | 0.788684 |
Target: 5'- gUGUCGcccAUGCUGCCGCUUACga-CCg -3' miRNA: 3'- gACAGC---UGCGGCGGCGAGUGaaaGGa -5' |
|||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 214986 | 0.67 | 0.914311 |
Target: 5'- aCUGgggCGACGCCGCUGCUguggcaGCga-CCg -3' miRNA: 3'- -GACa--GCUGCGGCGGCGAg-----UGaaaGGa -5' |
|||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 233206 | 0.8 | 0.311288 |
Target: 5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3' miRNA: 3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5' |
|||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 234657 | 0.66 | 0.938492 |
Target: 5'- gCUGagGACGCCGaCgCGCUUACUUaugucacgcaacacUCCc -3' miRNA: 3'- -GACagCUGCGGC-G-GCGAGUGAA--------------AGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home