miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 234657 0.66 0.938492
Target:  5'- gCUGagGACGCCGaCgCGCUUACUUaugucacgcaacacUCCc -3'
miRNA:   3'- -GACagCUGCGGC-G-GCGAGUGAA--------------AGGa -5'
29852 5' -56.4 NC_006273.1 + 233206 0.8 0.311288
Target:  5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3'
miRNA:   3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 214986 0.67 0.914311
Target:  5'- aCUGgggCGACGCCGCUGCUguggcaGCga-CCg -3'
miRNA:   3'- -GACa--GCUGCGGCGGCGAg-----UGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 213189 0.7 0.788684
Target:  5'- gUGUCGcccAUGCUGCCGCUUACga-CCg -3'
miRNA:   3'- gACAGC---UGCGGCGGCGAGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 213079 0.68 0.88322
Target:  5'- -cGUUGGCGCCGCUGC-CGCg--UCg -3'
miRNA:   3'- gaCAGCUGCGGCGGCGaGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 211022 0.69 0.862038
Target:  5'- gCUGUCGAacaGCCGCCGaaaCACgaUCUg -3'
miRNA:   3'- -GACAGCUg--CGGCGGCga-GUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 208005 0.72 0.685207
Target:  5'- uUGUCGGCGUCGCUGCUgACgaacgcgUCUg -3'
miRNA:   3'- gACAGCUGCGGCGGCGAgUGaa-----AGGa -5'
29852 5' -56.4 NC_006273.1 + 202615 0.69 0.862038
Target:  5'- uUGUgGugcGCGCCGCCGaCUCGCUg-CCg -3'
miRNA:   3'- gACAgC---UGCGGCGGC-GAGUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 201964 0.66 0.955211
Target:  5'- gCUGUCGcGCGCCGCCGacgcccgaggcggugCGCg-UCCa -3'
miRNA:   3'- -GACAGC-UGCGGCGGCga-------------GUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 198654 0.71 0.74297
Target:  5'- -gGcCGAgcugUGCCGCCGCUCGCgcgCCUc -3'
miRNA:   3'- gaCaGCU----GCGGCGGCGAGUGaaaGGA- -5'
29852 5' -56.4 NC_006273.1 + 198144 0.75 0.528194
Target:  5'- -cGUCGuCGCCGCCGUcgCGCcUUCCUc -3'
miRNA:   3'- gaCAGCuGCGGCGGCGa-GUGaAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 197295 0.67 0.914311
Target:  5'- -aGUCGGCGcCCGCCGC-CGagg-CCg -3'
miRNA:   3'- gaCAGCUGC-GGCGGCGaGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 196743 0.69 0.846936
Target:  5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3'
miRNA:   3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5'
29852 5' -56.4 NC_006273.1 + 194719 0.66 0.938492
Target:  5'- gCUGagGACGCCGaCgCGCUUACUUaugucacgcaacacUCCc -3'
miRNA:   3'- -GACagCUGCGGC-G-GCGAGUGAA--------------AGGa -5'
29852 5' -56.4 NC_006273.1 + 191483 0.83 0.210164
Target:  5'- -aGUCGGCGCCGCCGC-CGCUUggaCCUu -3'
miRNA:   3'- gaCAGCUGCGGCGGCGaGUGAAa--GGA- -5'
29852 5' -56.4 NC_006273.1 + 183789 0.67 0.924682
Target:  5'- gUGUCGGaagaagaccccgcUGCCGCCGC-CACcccUCCg -3'
miRNA:   3'- gACAGCU-------------GCGGCGGCGaGUGaa-AGGa -5'
29852 5' -56.4 NC_006273.1 + 181340 0.72 0.708589
Target:  5'- cCUGUCGAgacgacgguaacaacCGCCGgcgugacguCCGCUCACggUCCg -3'
miRNA:   3'- -GACAGCU---------------GCGGC---------GGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 177554 0.66 0.952536
Target:  5'- uUGUUGGUGCCGCCGCg-ACggUUCUg -3'
miRNA:   3'- gACAGCUGCGGCGGCGagUGaaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 173356 0.66 0.956325
Target:  5'- -cG-CGGUGCCGCCGCUCugUUcggCUa -3'
miRNA:   3'- gaCaGCUGCGGCGGCGAGugAAa--GGa -5'
29852 5' -56.4 NC_006273.1 + 171695 0.7 0.779773
Target:  5'- aCUGcCGGCGCUGCUGCgcaUCACg-UCCUc -3'
miRNA:   3'- -GACaGCUGCGGCGGCG---AGUGaaAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.