miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 170114 0.69 0.839109
Target:  5'- -gGUCGuuguCGCUGCCGUguccgCGCUUUCUc -3'
miRNA:   3'- gaCAGCu---GCGGCGGCGa----GUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 169449 0.67 0.908529
Target:  5'- -aGUa-ACGCUGCCGUUCACguaggUUCCc -3'
miRNA:   3'- gaCAgcUGCGGCGGCGAGUGa----AAGGa -5'
29852 5' -56.4 NC_006273.1 + 166575 0.68 0.88322
Target:  5'- -cG-CGGCGCCGCCGgCUaCGCguccgggUUCCa -3'
miRNA:   3'- gaCaGCUGCGGCGGC-GA-GUGa------AAGGa -5'
29852 5' -56.4 NC_006273.1 + 162995 0.76 0.489647
Target:  5'- -cGUCGACGUCGCCGUcgUCACUUcuuucgcUCCc -3'
miRNA:   3'- gaCAGCUGCGGCGGCG--AGUGAA-------AGGa -5'
29852 5' -56.4 NC_006273.1 + 158362 0.68 0.902527
Target:  5'- -cGUCGuucgcgcggcguGCGCaCGCCGCUCACg--CUa -3'
miRNA:   3'- gaCAGC------------UGCG-GCGGCGAGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 156444 0.66 0.939868
Target:  5'- -aGUCGACGgCGUCGCUCcguGCggUCg- -3'
miRNA:   3'- gaCAGCUGCgGCGGCGAG---UGaaAGga -5'
29852 5' -56.4 NC_006273.1 + 151789 0.66 0.956325
Target:  5'- -cGUCG-CGCgCGCCcagGCUCAUggagUCCUc -3'
miRNA:   3'- gaCAGCuGCG-GCGG---CGAGUGaa--AGGA- -5'
29852 5' -56.4 NC_006273.1 + 150829 0.67 0.908529
Target:  5'- ---aCGACGuCUGCUGCUCACUcucgaUCCg -3'
miRNA:   3'- gacaGCUGC-GGCGGCGAGUGAa----AGGa -5'
29852 5' -56.4 NC_006273.1 + 141776 0.67 0.908529
Target:  5'- gCUG-CGcAgGCCGCCGCUCAag--CCg -3'
miRNA:   3'- -GACaGC-UgCGGCGGCGAGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 139870 0.66 0.956325
Target:  5'- gCUGUCGGCgcagucuccgGCCGCCGauuuCUCGgUcUCCg -3'
miRNA:   3'- -GACAGCUG----------CGGCGGC----GAGUgAaAGGa -5'
29852 5' -56.4 NC_006273.1 + 136704 0.73 0.635859
Target:  5'- -gGUCGcCGCCGCCGCgguugcuaUACUUUCUUa -3'
miRNA:   3'- gaCAGCuGCGGCGGCGa-------GUGAAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 135540 0.68 0.889869
Target:  5'- aUGaUCGcCGCCGCCGCUC-CUcccgCCc -3'
miRNA:   3'- gAC-AGCuGCGGCGGCGAGuGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 133965 0.68 0.896306
Target:  5'- -cGUCGGCGCCGCCucGCaucaUCACcgacCCUg -3'
miRNA:   3'- gaCAGCUGCGGCGG--CG----AGUGaaa-GGA- -5'
29852 5' -56.4 NC_006273.1 + 133647 0.73 0.615058
Target:  5'- -cGcCGGCGaCCGCCGUcugagccUCACUUUCCa -3'
miRNA:   3'- gaCaGCUGC-GGCGGCG-------AGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 133313 0.66 0.94431
Target:  5'- gUGUgGcCGCCGCUGCUCGagcaCCUc -3'
miRNA:   3'- gACAgCuGCGGCGGCGAGUgaaaGGA- -5'
29852 5' -56.4 NC_006273.1 + 128756 0.69 0.854581
Target:  5'- -cGUCGccauuacCGUCGCCGCUCAaagUUCCc -3'
miRNA:   3'- gaCAGCu------GCGGCGGCGAGUga-AAGGa -5'
29852 5' -56.4 NC_006273.1 + 124460 0.71 0.770738
Target:  5'- -cGcCGACGCUG-CGCUCGCggUCCa -3'
miRNA:   3'- gaCaGCUGCGGCgGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 121650 0.7 0.797464
Target:  5'- ---aCGGCGCCGCCGCcgUCGCcaccUCCg -3'
miRNA:   3'- gacaGCUGCGGCGGCG--AGUGaa--AGGa -5'
29852 5' -56.4 NC_006273.1 + 119984 0.73 0.665536
Target:  5'- gCUGcCGuacaGCGCCGCCGCUCAUaaugCCg -3'
miRNA:   3'- -GACaGC----UGCGGCGGCGAGUGaaa-GGa -5'
29852 5' -56.4 NC_006273.1 + 118983 0.68 0.896306
Target:  5'- -aGUCcuCGUCGCCGCUgGCU-UCCUc -3'
miRNA:   3'- gaCAGcuGCGGCGGCGAgUGAaAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.