miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 118393 0.67 0.914311
Target:  5'- gUGUCGuguuaGCCGCCGCU-GCUgcCCa -3'
miRNA:   3'- gACAGCug---CGGCGGCGAgUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 117470 0.71 0.770738
Target:  5'- -cGaCGACGCCGCCGCgg--UUUCCUu -3'
miRNA:   3'- gaCaGCUGCGGCGGCGagugAAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 113516 0.67 0.930317
Target:  5'- aUGUCGaucuauguguacGCGCUGCCGCUCAagaugCUg -3'
miRNA:   3'- gACAGC------------UGCGGCGGCGAGUgaaa-GGa -5'
29852 5' -56.4 NC_006273.1 + 111284 1.07 0.006035
Target:  5'- uCUGUCGACGCCGCCGCUCACUUUCCUc -3'
miRNA:   3'- -GACAGCUGCGGCGGCGAGUGAAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 101958 0.67 0.935204
Target:  5'- -cGUgCGcGCGCCGUCGCgUCGCUUgacggCCa -3'
miRNA:   3'- gaCA-GC-UGCGGCGGCG-AGUGAAa----GGa -5'
29852 5' -56.4 NC_006273.1 + 98808 0.68 0.88322
Target:  5'- ---cUGcCGCCGCCGUUCGCggaggaggUUCCUg -3'
miRNA:   3'- gacaGCuGCGGCGGCGAGUGa-------AAGGA- -5'
29852 5' -56.4 NC_006273.1 + 97364 0.67 0.930317
Target:  5'- -cGcCGGCGCCGCCuaGCgUCACUgccUUCUg -3'
miRNA:   3'- gaCaGCUGCGGCGG--CG-AGUGA---AAGGa -5'
29852 5' -56.4 NC_006273.1 + 97236 0.68 0.88322
Target:  5'- -gGcCGugGCCGCCGC-CAUgagCCg -3'
miRNA:   3'- gaCaGCugCGGCGGCGaGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 93178 0.66 0.948532
Target:  5'- -cGUCcaccGCGgaCGCCGCUCACgcugUCCg -3'
miRNA:   3'- gaCAGc---UGCg-GCGGCGAGUGaa--AGGa -5'
29852 5' -56.4 NC_006273.1 + 92464 0.69 0.862038
Target:  5'- gCUGUCGAUGCaCGCCaGCUucCACUggUCg -3'
miRNA:   3'- -GACAGCUGCG-GCGG-CGA--GUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 89364 0.66 0.952536
Target:  5'- gUGUCGG-GCCGCgGCagUCGCUUagCCa -3'
miRNA:   3'- gACAGCUgCGGCGgCG--AGUGAAa-GGa -5'
29852 5' -56.4 NC_006273.1 + 88848 0.7 0.806103
Target:  5'- gUGUCG-CGCCGuCCGCU-ACUUUCg- -3'
miRNA:   3'- gACAGCuGCGGC-GGCGAgUGAAAGga -5'
29852 5' -56.4 NC_006273.1 + 82542 0.68 0.8693
Target:  5'- -cG-CGGCGCCcagGCCGCUCAUgaggucgUCCa -3'
miRNA:   3'- gaCaGCUGCGG---CGGCGAGUGaa-----AGGa -5'
29852 5' -56.4 NC_006273.1 + 81806 0.68 0.902527
Target:  5'- -gGUC-ACGCCGCCGCUCAg------ -3'
miRNA:   3'- gaCAGcUGCGGCGGCGAGUgaaagga -5'
29852 5' -56.4 NC_006273.1 + 71749 0.67 0.930317
Target:  5'- ----gGGCGCCGUC-UUCGCUUUCCa -3'
miRNA:   3'- gacagCUGCGGCGGcGAGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 68065 0.7 0.822931
Target:  5'- -cGcCGugGCCGCCGCUgccgcCGCUguggCCg -3'
miRNA:   3'- gaCaGCugCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 67741 0.7 0.779773
Target:  5'- -cGUUG-CgGCCGCCGCUCACagUCUa -3'
miRNA:   3'- gaCAGCuG-CGGCGGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 65057 0.67 0.91987
Target:  5'- aUGUCacaACGCCGCCGUguaUCACUgcgagggucUCCa -3'
miRNA:   3'- gACAGc--UGCGGCGGCG---AGUGAa--------AGGa -5'
29852 5' -56.4 NC_006273.1 + 56657 0.71 0.74297
Target:  5'- -gGUCGugaucacCGCCGCCGCcaccgcugcUCAUUUUCCg -3'
miRNA:   3'- gaCAGCu------GCGGCGGCG---------AGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 55548 0.67 0.925205
Target:  5'- uCUGUCGACGCUaGCCGCgacuaugugCAUgUUCg- -3'
miRNA:   3'- -GACAGCUGCGG-CGGCGa--------GUGaAAGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.