miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 71749 0.67 0.930317
Target:  5'- ----gGGCGCCGUC-UUCGCUUUCCa -3'
miRNA:   3'- gacagCUGCGGCGGcGAGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 118983 0.68 0.896306
Target:  5'- -aGUCcuCGUCGCCGCUgGCU-UCCUc -3'
miRNA:   3'- gaCAGcuGCGGCGGCGAgUGAaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 81806 0.68 0.902527
Target:  5'- -gGUC-ACGCCGCCGCUCAg------ -3'
miRNA:   3'- gaCAGcUGCGGCGGCGAGUgaaagga -5'
29852 5' -56.4 NC_006273.1 + 141776 0.67 0.908529
Target:  5'- gCUG-CGcAgGCCGCCGCUCAag--CCg -3'
miRNA:   3'- -GACaGC-UgCGGCGGCGAGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 169449 0.67 0.908529
Target:  5'- -aGUa-ACGCUGCCGUUCACguaggUUCCc -3'
miRNA:   3'- gaCAgcUGCGGCGGCGAGUGa----AAGGa -5'
29852 5' -56.4 NC_006273.1 + 118393 0.67 0.914311
Target:  5'- gUGUCGuguuaGCCGCCGCU-GCUgcCCa -3'
miRNA:   3'- gACAGCug---CGGCGGCGAgUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 197295 0.67 0.914311
Target:  5'- -aGUCGGCGcCCGCCGC-CGagg-CCg -3'
miRNA:   3'- gaCAGCUGC-GGCGGCGaGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 214986 0.67 0.914311
Target:  5'- aCUGgggCGACGCCGCUGCUguggcaGCga-CCg -3'
miRNA:   3'- -GACa--GCUGCGGCGGCGAg-----UGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 65057 0.67 0.91987
Target:  5'- aUGUCacaACGCCGCCGUguaUCACUgcgagggucUCCa -3'
miRNA:   3'- gACAGc--UGCGGCGGCG---AGUGAa--------AGGa -5'
29852 5' -56.4 NC_006273.1 + 1863 0.68 0.889869
Target:  5'- -cGUCGuACGCUGCCGCggaacagGCUUUCg- -3'
miRNA:   3'- gaCAGC-UGCGGCGGCGag-----UGAAAGga -5'
29852 5' -56.4 NC_006273.1 + 38347 0.68 0.88322
Target:  5'- -cGUCGuCGCCGCUGC-CGCUcgUCa -3'
miRNA:   3'- gaCAGCuGCGGCGGCGaGUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 82542 0.68 0.8693
Target:  5'- -cG-CGGCGCCcagGCCGCUCAUgaggucgUCCa -3'
miRNA:   3'- gaCaGCUGCGG---CGGCGAGUGaa-----AGGa -5'
29852 5' -56.4 NC_006273.1 + 233206 0.8 0.311288
Target:  5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3'
miRNA:   3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 162995 0.76 0.489647
Target:  5'- -cGUCGACGUCGCCGUcgUCACUUcuuucgcUCCc -3'
miRNA:   3'- gaCAGCUGCGGCGGCG--AGUGAA-------AGGa -5'
29852 5' -56.4 NC_006273.1 + 56657 0.71 0.74297
Target:  5'- -gGUCGugaucacCGCCGCCGCcaccgcugcUCAUUUUCCg -3'
miRNA:   3'- gaCAGCu------GCGGCGGCG---------AGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 35072 0.71 0.74297
Target:  5'- ---aCGACGCCcccguGCCGCUCACgcuaUCCa -3'
miRNA:   3'- gacaGCUGCGG-----CGGCGAGUGaa--AGGa -5'
29852 5' -56.4 NC_006273.1 + 124460 0.71 0.770738
Target:  5'- -cGcCGACGCUG-CGCUCGCggUCCa -3'
miRNA:   3'- gaCaGCUGCGGCgGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 213189 0.7 0.788684
Target:  5'- gUGUCGcccAUGCUGCCGCUUACga-CCg -3'
miRNA:   3'- gACAGC---UGCGGCGGCGAGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 196743 0.69 0.846936
Target:  5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3'
miRNA:   3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5'
29852 5' -56.4 NC_006273.1 + 211022 0.69 0.862038
Target:  5'- gCUGUCGAacaGCCGCCGaaaCACgaUCUg -3'
miRNA:   3'- -GACAGCUg--CGGCGGCga-GUGaaAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.