Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29852 | 5' | -56.4 | NC_006273.1 | + | 55548 | 0.67 | 0.925205 |
Target: 5'- uCUGUCGACGCUaGCCGCgacuaugugCAUgUUCg- -3' miRNA: 3'- -GACAGCUGCGG-CGGCGa--------GUGaAAGga -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 97364 | 0.67 | 0.930317 |
Target: 5'- -cGcCGGCGCCGCCuaGCgUCACUgccUUCUg -3' miRNA: 3'- gaCaGCUGCGGCGG--CG-AGUGA---AAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 113516 | 0.67 | 0.930317 |
Target: 5'- aUGUCGaucuauguguacGCGCUGCCGCUCAagaugCUg -3' miRNA: 3'- gACAGC------------UGCGGCGGCGAGUgaaa-GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 128756 | 0.69 | 0.854581 |
Target: 5'- -cGUCGccauuacCGUCGCCGCUCAaagUUCCc -3' miRNA: 3'- gaCAGCu------GCGGCGGCGAGUga-AAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 1851 | 0.69 | 0.846936 |
Target: 5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3' miRNA: 3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 170114 | 0.69 | 0.839109 |
Target: 5'- -gGUCGuuguCGCUGCCGUguccgCGCUUUCUc -3' miRNA: 3'- gaCAGCu---GCGGCGGCGa----GUGAAAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 38313 | 0.8 | 0.311288 |
Target: 5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3' miRNA: 3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 198144 | 0.75 | 0.528194 |
Target: 5'- -cGUCGuCGCCGCCGUcgCGCcUUCCUc -3' miRNA: 3'- gaCAGCuGCGGCGGCGa-GUGaAAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 133647 | 0.73 | 0.615058 |
Target: 5'- -cGcCGGCGaCCGCCGUcugagccUCACUUUCCa -3' miRNA: 3'- gaCaGCUGC-GGCGGCG-------AGUGAAAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 136704 | 0.73 | 0.635859 |
Target: 5'- -gGUCGcCGCCGCCGCgguugcuaUACUUUCUUa -3' miRNA: 3'- gaCAGCuGCGGCGGCGa-------GUGAAAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 119984 | 0.73 | 0.665536 |
Target: 5'- gCUGcCGuacaGCGCCGCCGCUCAUaaugCCg -3' miRNA: 3'- -GACaGC----UGCGGCGGCGAGUGaaa-GGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 208005 | 0.72 | 0.685207 |
Target: 5'- uUGUCGGCGUCGCUGCUgACgaacgcgUCUg -3' miRNA: 3'- gACAGCUGCGGCGGCGAgUGaa-----AGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 181340 | 0.72 | 0.708589 |
Target: 5'- cCUGUCGAgacgacgguaacaacCGCCGgcgugacguCCGCUCACggUCCg -3' miRNA: 3'- -GACAGCU---------------GCGGC---------GGCGAGUGaaAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 198654 | 0.71 | 0.74297 |
Target: 5'- -gGcCGAgcugUGCCGCCGCUCGCgcgCCUc -3' miRNA: 3'- gaCaGCU----GCGGCGGCGAGUGaaaGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 117470 | 0.71 | 0.770738 |
Target: 5'- -cGaCGACGCCGCCGCgg--UUUCCUu -3' miRNA: 3'- gaCaGCUGCGGCGGCGagugAAAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 67741 | 0.7 | 0.779773 |
Target: 5'- -cGUUG-CgGCCGCCGCUCACagUCUa -3' miRNA: 3'- gaCAGCuG-CGGCGGCGAGUGaaAGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 171695 | 0.7 | 0.779773 |
Target: 5'- aCUGcCGGCGCUGCUGCgcaUCACg-UCCUc -3' miRNA: 3'- -GACaGCUGCGGCGGCG---AGUGaaAGGA- -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 121650 | 0.7 | 0.797464 |
Target: 5'- ---aCGGCGCCGCCGCcgUCGCcaccUCCg -3' miRNA: 3'- gacaGCUGCGGCGGCG--AGUGaa--AGGa -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 88848 | 0.7 | 0.806103 |
Target: 5'- gUGUCG-CGCCGuCCGCU-ACUUUCg- -3' miRNA: 3'- gACAGCuGCGGC-GGCGAgUGAAAGga -5' |
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29852 | 5' | -56.4 | NC_006273.1 | + | 68065 | 0.7 | 0.822931 |
Target: 5'- -cGcCGugGCCGCCGCUgccgcCGCUguggCCg -3' miRNA: 3'- gaCaGCugCGGCGGCGA-----GUGAaa--GGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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