miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 111284 1.07 0.006035
Target:  5'- uCUGUCGACGCCGCCGCUCACUUUCCUc -3'
miRNA:   3'- -GACAGCUGCGGCGGCGAGUGAAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 128756 0.69 0.854581
Target:  5'- -cGUCGccauuacCGUCGCCGCUCAaagUUCCc -3'
miRNA:   3'- gaCAGCu------GCGGCGGCGAGUga-AAGGa -5'
29852 5' -56.4 NC_006273.1 + 202615 0.69 0.862038
Target:  5'- uUGUgGugcGCGCCGCCGaCUCGCUg-CCg -3'
miRNA:   3'- gACAgC---UGCGGCGGC-GAGUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 173356 0.66 0.956325
Target:  5'- -cG-CGGUGCCGCCGCUCugUUcggCUa -3'
miRNA:   3'- gaCaGCUGCGGCGGCGAGugAAa--GGa -5'
29852 5' -56.4 NC_006273.1 + 136704 0.73 0.635859
Target:  5'- -gGUCGcCGCCGCCGCgguugcuaUACUUUCUUa -3'
miRNA:   3'- gaCAGCuGCGGCGGCGa-------GUGAAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 119984 0.73 0.665536
Target:  5'- gCUGcCGuacaGCGCCGCCGCUCAUaaugCCg -3'
miRNA:   3'- -GACaGC----UGCGGCGGCGAGUGaaa-GGa -5'
29852 5' -56.4 NC_006273.1 + 181340 0.72 0.708589
Target:  5'- cCUGUCGAgacgacgguaacaacCGCCGgcgugacguCCGCUCACggUCCg -3'
miRNA:   3'- -GACAGCU---------------GCGGC---------GGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 198654 0.71 0.74297
Target:  5'- -gGcCGAgcugUGCCGCCGCUCGCgcgCCUc -3'
miRNA:   3'- gaCaGCU----GCGGCGGCGAGUGaaaGGA- -5'
29852 5' -56.4 NC_006273.1 + 171695 0.7 0.779773
Target:  5'- aCUGcCGGCGCUGCUGCgcaUCACg-UCCUc -3'
miRNA:   3'- -GACaGCUGCGGCGGCG---AGUGaaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 1851 0.69 0.846936
Target:  5'- -cGUCGGCGCCGCacccCGCgUCGCUgcugacggCCg -3'
miRNA:   3'- gaCAGCUGCGGCG----GCG-AGUGAaa------GGa -5'
29852 5' -56.4 NC_006273.1 + 88848 0.7 0.806103
Target:  5'- gUGUCG-CGCCGuCCGCU-ACUUUCg- -3'
miRNA:   3'- gACAGCuGCGGC-GGCGAgUGAAAGga -5'
29852 5' -56.4 NC_006273.1 + 67741 0.7 0.779773
Target:  5'- -cGUUG-CgGCCGCCGCUCACagUCUa -3'
miRNA:   3'- gaCAGCuG-CGGCGGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 38313 0.8 0.311288
Target:  5'- -cGUCGGCGCCGCCGCUgcugcCGCUgccgCCg -3'
miRNA:   3'- gaCAGCUGCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 68065 0.7 0.822931
Target:  5'- -cGcCGugGCCGCCGCUgccgcCGCUguggCCg -3'
miRNA:   3'- gaCaGCugCGGCGGCGA-----GUGAaa--GGa -5'
29852 5' -56.4 NC_006273.1 + 198144 0.75 0.528194
Target:  5'- -cGUCGuCGCCGCCGUcgCGCcUUCCUc -3'
miRNA:   3'- gaCAGCuGCGGCGGCGa-GUGaAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 117470 0.71 0.770738
Target:  5'- -cGaCGACGCCGCCGCgg--UUUCCUu -3'
miRNA:   3'- gaCaGCUGCGGCGGCGagugAAAGGA- -5'
29852 5' -56.4 NC_006273.1 + 170114 0.69 0.839109
Target:  5'- -gGUCGuuguCGCUGCCGUguccgCGCUUUCUc -3'
miRNA:   3'- gaCAGCu---GCGGCGGCGa----GUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 92464 0.69 0.862038
Target:  5'- gCUGUCGAUGCaCGCCaGCUucCACUggUCg -3'
miRNA:   3'- -GACAGCUGCG-GCGG-CGA--GUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 133647 0.73 0.615058
Target:  5'- -cGcCGGCGaCCGCCGUcugagccUCACUUUCCa -3'
miRNA:   3'- gaCaGCUGC-GGCGGCG-------AGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 208005 0.72 0.685207
Target:  5'- uUGUCGGCGUCGCUGCUgACgaacgcgUCUg -3'
miRNA:   3'- gACAGCUGCGGCGGCGAgUGaa-----AGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.