miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 5' -56.4 NC_006273.1 + 82542 0.68 0.8693
Target:  5'- -cG-CGGCGCCcagGCCGCUCAUgaggucgUCCa -3'
miRNA:   3'- gaCaGCUGCGG---CGGCGAGUGaa-----AGGa -5'
29852 5' -56.4 NC_006273.1 + 177554 0.66 0.952536
Target:  5'- uUGUUGGUGCCGCCGCg-ACggUUCUg -3'
miRNA:   3'- gACAGCUGCGGCGGCGagUGaaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 139870 0.66 0.956325
Target:  5'- gCUGUCGGCgcagucuccgGCCGCCGauuuCUCGgUcUCCg -3'
miRNA:   3'- -GACAGCUG----------CGGCGGC----GAGUgAaAGGa -5'
29852 5' -56.4 NC_006273.1 + 213189 0.7 0.788684
Target:  5'- gUGUCGcccAUGCUGCCGCUUACga-CCg -3'
miRNA:   3'- gACAGC---UGCGGCGGCGAGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 124460 0.71 0.770738
Target:  5'- -cGcCGACGCUG-CGCUCGCggUCCa -3'
miRNA:   3'- gaCaGCUGCGGCgGCGAGUGaaAGGa -5'
29852 5' -56.4 NC_006273.1 + 35072 0.71 0.74297
Target:  5'- ---aCGACGCCcccguGCCGCUCACgcuaUCCa -3'
miRNA:   3'- gacaGCUGCGG-----CGGCGAGUGaa--AGGa -5'
29852 5' -56.4 NC_006273.1 + 151789 0.66 0.956325
Target:  5'- -cGUCG-CGCgCGCCcagGCUCAUggagUCCUc -3'
miRNA:   3'- gaCAGCuGCG-GCGG---CGAGUGaa--AGGA- -5'
29852 5' -56.4 NC_006273.1 + 162995 0.76 0.489647
Target:  5'- -cGUCGACGUCGCCGUcgUCACUUcuuucgcUCCc -3'
miRNA:   3'- gaCAGCUGCGGCGGCG--AGUGAA-------AGGa -5'
29852 5' -56.4 NC_006273.1 + 38347 0.68 0.88322
Target:  5'- -cGUCGuCGCCGCUGC-CGCUcgUCa -3'
miRNA:   3'- gaCAGCuGCGGCGGCGaGUGAaaGGa -5'
29852 5' -56.4 NC_006273.1 + 1863 0.68 0.889869
Target:  5'- -cGUCGuACGCUGCCGCggaacagGCUUUCg- -3'
miRNA:   3'- gaCAGC-UGCGGCGGCGag-----UGAAAGga -5'
29852 5' -56.4 NC_006273.1 + 118983 0.68 0.896306
Target:  5'- -aGUCcuCGUCGCCGCUgGCU-UCCUc -3'
miRNA:   3'- gaCAGcuGCGGCGGCGAgUGAaAGGA- -5'
29852 5' -56.4 NC_006273.1 + 194719 0.66 0.938492
Target:  5'- gCUGagGACGCCGaCgCGCUUACUUaugucacgcaacacUCCc -3'
miRNA:   3'- -GACagCUGCGGC-G-GCGAGUGAA--------------AGGa -5'
29852 5' -56.4 NC_006273.1 + 101958 0.67 0.935204
Target:  5'- -cGUgCGcGCGCCGUCGCgUCGCUUgacggCCa -3'
miRNA:   3'- gaCA-GC-UGCGGCGGCG-AGUGAAa----GGa -5'
29852 5' -56.4 NC_006273.1 + 71749 0.67 0.930317
Target:  5'- ----gGGCGCCGUC-UUCGCUUUCCa -3'
miRNA:   3'- gacagCUGCGGCGGcGAGUGAAAGGa -5'
29852 5' -56.4 NC_006273.1 + 65057 0.67 0.91987
Target:  5'- aUGUCacaACGCCGCCGUguaUCACUgcgagggucUCCa -3'
miRNA:   3'- gACAGc--UGCGGCGGCG---AGUGAa--------AGGa -5'
29852 5' -56.4 NC_006273.1 + 214986 0.67 0.914311
Target:  5'- aCUGgggCGACGCCGCUGCUguggcaGCga-CCg -3'
miRNA:   3'- -GACa--GCUGCGGCGGCGAg-----UGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 197295 0.67 0.914311
Target:  5'- -aGUCGGCGcCCGCCGC-CGagg-CCg -3'
miRNA:   3'- gaCAGCUGC-GGCGGCGaGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 38315 0.66 0.948532
Target:  5'- cCUGUUGAcCGUCGCCGUgucgUCGCcg-CCa -3'
miRNA:   3'- -GACAGCU-GCGGCGGCG----AGUGaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 141776 0.67 0.908529
Target:  5'- gCUG-CGcAgGCCGCCGCUCAag--CCg -3'
miRNA:   3'- -GACaGC-UgCGGCGGCGAGUgaaaGGa -5'
29852 5' -56.4 NC_006273.1 + 81806 0.68 0.902527
Target:  5'- -gGUC-ACGCCGCCGCUCAg------ -3'
miRNA:   3'- gaCAGcUGCGGCGGCGAGUgaaagga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.