miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 3' -59.5 NC_006273.1 + 153596 0.66 0.891436
Target:  5'- gCGGCGuGAccggCgGUGCGGUcgcggGUGGCCGg -3'
miRNA:   3'- -GCUGCuCUa---G-CGCGCCGa----CACCGGCg -5'
29853 3' -59.5 NC_006273.1 + 70687 0.66 0.891436
Target:  5'- gGugGAGggCGCGCGGCaacucgagauggUGUacccGGCacccgaGCa -3'
miRNA:   3'- gCugCUCuaGCGCGCCG------------ACA----CCGg-----CG- -5'
29853 3' -59.5 NC_006273.1 + 147219 0.66 0.891436
Target:  5'- cCGACGAuGugcucuucuUCGUGgaUGGCUGcgaggcgcUGGCCGCg -3'
miRNA:   3'- -GCUGCU-Cu--------AGCGC--GCCGAC--------ACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 81138 0.66 0.891436
Target:  5'- aCGA-GGGGUUGCGgaugGaGCUGggcGGCCGCa -3'
miRNA:   3'- -GCUgCUCUAGCGCg---C-CGACa--CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 105106 0.66 0.891436
Target:  5'- --uCGAGGcCgGCGCGGCUGcgacGGuuGCa -3'
miRNA:   3'- gcuGCUCUaG-CGCGCCGACa---CCggCG- -5'
29853 3' -59.5 NC_006273.1 + 126991 0.66 0.891436
Target:  5'- aCGugGAGAcCGCgGUGGC---GGCCGg -3'
miRNA:   3'- -GCugCUCUaGCG-CGCCGacaCCGGCg -5'
29853 3' -59.5 NC_006273.1 + 81977 0.66 0.891436
Target:  5'- uGACGAGcagCGCGCGGaaGggaaagaagGGCCa- -3'
miRNA:   3'- gCUGCUCua-GCGCGCCgaCa--------CCGGcg -5'
29853 3' -59.5 NC_006273.1 + 31725 0.66 0.890805
Target:  5'- --cCGAGAaagggauaguggcUCGgGuCGGCUGgucgGGCCGUc -3'
miRNA:   3'- gcuGCUCU-------------AGCgC-GCCGACa---CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 119840 0.66 0.885031
Target:  5'- aGugGuGAgcCGUGCGGCggaUGaUGGCgCGCg -3'
miRNA:   3'- gCugCuCUa-GCGCGCCG---AC-ACCG-GCG- -5'
29853 3' -59.5 NC_006273.1 + 164223 0.66 0.885031
Target:  5'- -cGCGGGugguGUUGCGCGGCgacggGUGGCa-- -3'
miRNA:   3'- gcUGCUC----UAGCGCGCCGa----CACCGgcg -5'
29853 3' -59.5 NC_006273.1 + 99676 0.66 0.885031
Target:  5'- cCGGCGAGGg-GCGCcgggGGaCUGggagGGaCCGCg -3'
miRNA:   3'- -GCUGCUCUagCGCG----CC-GACa---CC-GGCG- -5'
29853 3' -59.5 NC_006273.1 + 131853 0.66 0.885031
Target:  5'- aCGGuCGAGAgaa-GCGGCUGcaguUGGaCCGCc -3'
miRNA:   3'- -GCU-GCUCUagcgCGCCGAC----ACC-GGCG- -5'
29853 3' -59.5 NC_006273.1 + 169152 0.66 0.884379
Target:  5'- uGACGAGAcggCGUGUGGacgagcuauaUGUGGCaggagguCGCg -3'
miRNA:   3'- gCUGCUCUa--GCGCGCCg---------ACACCG-------GCG- -5'
29853 3' -59.5 NC_006273.1 + 149494 0.66 0.878427
Target:  5'- gCGGCGGGAcaUUGCgGUGGCgcuUGUugcgcgGGCUGCg -3'
miRNA:   3'- -GCUGCUCU--AGCG-CGCCG---ACA------CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 34529 0.66 0.878427
Target:  5'- -uGCG-GAUCGgGCGGCaagGGCaCGCc -3'
miRNA:   3'- gcUGCuCUAGCgCGCCGacaCCG-GCG- -5'
29853 3' -59.5 NC_006273.1 + 149284 0.66 0.878427
Target:  5'- uCGGcCGaAGugugCGUGCGGaCUGUGGUCGa -3'
miRNA:   3'- -GCU-GC-UCua--GCGCGCC-GACACCGGCg -5'
29853 3' -59.5 NC_006273.1 + 144522 0.66 0.878427
Target:  5'- cCGACGAGGUcucgcuggaugCGCGCaGCgcuuuUGUGGaggCGCg -3'
miRNA:   3'- -GCUGCUCUA-----------GCGCGcCG-----ACACCg--GCG- -5'
29853 3' -59.5 NC_006273.1 + 187295 0.66 0.878427
Target:  5'- gCGGCGucGUUGCcgggGCGGCUGcuccaGGuCCGCg -3'
miRNA:   3'- -GCUGCucUAGCG----CGCCGACa----CC-GGCG- -5'
29853 3' -59.5 NC_006273.1 + 217374 0.66 0.876408
Target:  5'- uGGCGGGGUUGCGCaGuGCUacggugguucccugGUGGCgcUGCa -3'
miRNA:   3'- gCUGCUCUAGCGCG-C-CGA--------------CACCG--GCG- -5'
29853 3' -59.5 NC_006273.1 + 140466 0.66 0.87163
Target:  5'- gCGACGuGGagGCcCuGUUGUGGCUGCu -3'
miRNA:   3'- -GCUGCuCUagCGcGcCGACACCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.