miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 3' -59.5 NC_006273.1 + 130848 0.66 0.864643
Target:  5'- aCGACGAGcgCGgGUcacaaGCUGUcacuGCCGCg -3'
miRNA:   3'- -GCUGCUCuaGCgCGc----CGACAc---CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 144172 0.66 0.87163
Target:  5'- gCGcCGAGAUCGCcgaGGCccuggagcgcGUGGCCGa -3'
miRNA:   3'- -GCuGCUCUAGCGcg-CCGa---------CACCGGCg -5'
29853 3' -59.5 NC_006273.1 + 140466 0.66 0.87163
Target:  5'- gCGACGuGGagGCcCuGUUGUGGCUGCu -3'
miRNA:   3'- -GCUGCuCUagCGcGcCGACACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 207305 0.66 0.857471
Target:  5'- uCGACG-GAUCG-GCGGUgGUgacGGCgGCg -3'
miRNA:   3'- -GCUGCuCUAGCgCGCCGaCA---CCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 196243 0.66 0.864643
Target:  5'- aCGGCGuGggCGCGaCGgaccugcgucaGCUGUcGCCGCg -3'
miRNA:   3'- -GCUGCuCuaGCGC-GC-----------CGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 149284 0.66 0.878427
Target:  5'- uCGGcCGaAGugugCGUGCGGaCUGUGGUCGa -3'
miRNA:   3'- -GCU-GC-UCua--GCGCGCC-GACACCGGCg -5'
29853 3' -59.5 NC_006273.1 + 119840 0.66 0.885031
Target:  5'- aGugGuGAgcCGUGCGGCggaUGaUGGCgCGCg -3'
miRNA:   3'- gCugCuCUa-GCGCGCCG---AC-ACCG-GCG- -5'
29853 3' -59.5 NC_006273.1 + 164223 0.66 0.885031
Target:  5'- -cGCGGGugguGUUGCGCGGCgacggGUGGCa-- -3'
miRNA:   3'- gcUGCUC----UAGCGCGCCGa----CACCGgcg -5'
29853 3' -59.5 NC_006273.1 + 169152 0.66 0.884379
Target:  5'- uGACGAGAcggCGUGUGGacgagcuauaUGUGGCaggagguCGCg -3'
miRNA:   3'- gCUGCUCUa--GCGCGCCg---------ACACCG-------GCG- -5'
29853 3' -59.5 NC_006273.1 + 217374 0.66 0.876408
Target:  5'- uGGCGGGGUUGCGCaGuGCUacggugguucccugGUGGCgcUGCa -3'
miRNA:   3'- gCUGCUCUAGCGCG-C-CGA--------------CACCG--GCG- -5'
29853 3' -59.5 NC_006273.1 + 51559 0.66 0.868858
Target:  5'- aCGGgGGGGUgGUgGCGGCggaggacggagggGUGGCgGCg -3'
miRNA:   3'- -GCUgCUCUAgCG-CGCCGa------------CACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 141754 0.66 0.857471
Target:  5'- cCGGCGccaguGGAUgCGCGaaGCUGcgcaGGCCGCc -3'
miRNA:   3'- -GCUGC-----UCUA-GCGCgcCGACa---CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 153596 0.66 0.891436
Target:  5'- gCGGCGuGAccggCgGUGCGGUcgcggGUGGCCGg -3'
miRNA:   3'- -GCUGCuCUa---G-CGCGCCGa----CACCGGCg -5'
29853 3' -59.5 NC_006273.1 + 99676 0.66 0.885031
Target:  5'- cCGGCGAGGg-GCGCcgggGGaCUGggagGGaCCGCg -3'
miRNA:   3'- -GCUGCUCUagCGCG----CC-GACa---CC-GGCG- -5'
29853 3' -59.5 NC_006273.1 + 105106 0.66 0.891436
Target:  5'- --uCGAGGcCgGCGCGGCUGcgacGGuuGCa -3'
miRNA:   3'- gcuGCUCUaG-CGCGCCGACa---CCggCG- -5'
29853 3' -59.5 NC_006273.1 + 186508 0.66 0.857471
Target:  5'- gCGGCaAGua-GCGCGaGCUGUGG-CGCc -3'
miRNA:   3'- -GCUGcUCuagCGCGC-CGACACCgGCG- -5'
29853 3' -59.5 NC_006273.1 + 196194 0.66 0.856744
Target:  5'- gGACGgccguacGGAUucuaCGCGCGGgUGacGCCGCg -3'
miRNA:   3'- gCUGC-------UCUA----GCGCGCCgACacCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 131853 0.66 0.885031
Target:  5'- aCGGuCGAGAgaa-GCGGCUGcaguUGGaCCGCc -3'
miRNA:   3'- -GCU-GCUCUagcgCGCCGAC----ACC-GGCG- -5'
29853 3' -59.5 NC_006273.1 + 126991 0.66 0.891436
Target:  5'- aCGugGAGAcCGCgGUGGC---GGCCGg -3'
miRNA:   3'- -GCugCUCUaGCG-CGCCGacaCCGGCg -5'
29853 3' -59.5 NC_006273.1 + 34529 0.66 0.878427
Target:  5'- -uGCG-GAUCGgGCGGCaagGGCaCGCc -3'
miRNA:   3'- gcUGCuCUAGCgCGCCGacaCCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.