Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29853 | 3' | -59.5 | NC_006273.1 | + | 149284 | 0.66 | 0.878427 |
Target: 5'- uCGGcCGaAGugugCGUGCGGaCUGUGGUCGa -3' miRNA: 3'- -GCU-GC-UCua--GCGCGCC-GACACCGGCg -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 119157 | 0.66 | 0.857471 |
Target: 5'- -aGCGAGAagaugUCGCGCGGaca--GCCGCu -3' miRNA: 3'- gcUGCUCU-----AGCGCGCCgacacCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 147219 | 0.66 | 0.891436 |
Target: 5'- cCGACGAuGugcucuucuUCGUGgaUGGCUGcgaggcgcUGGCCGCg -3' miRNA: 3'- -GCUGCU-Cu--------AGCGC--GCCGAC--------ACCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 144522 | 0.66 | 0.878427 |
Target: 5'- cCGACGAGGUcucgcuggaugCGCGCaGCgcuuuUGUGGaggCGCg -3' miRNA: 3'- -GCUGCUCUA-----------GCGCGcCG-----ACACCg--GCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 207305 | 0.66 | 0.857471 |
Target: 5'- uCGACG-GAUCG-GCGGUgGUgacGGCgGCg -3' miRNA: 3'- -GCUGCuCUAGCgCGCCGaCA---CCGgCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 36131 | 0.66 | 0.86746 |
Target: 5'- aGuACGGGAUgGUGCGGaagucauacacgcaUGUGGCCu- -3' miRNA: 3'- gC-UGCUCUAgCGCGCCg-------------ACACCGGcg -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 196194 | 0.66 | 0.856744 |
Target: 5'- gGACGgccguacGGAUucuaCGCGCGGgUGacGCCGCg -3' miRNA: 3'- gCUGC-------UCUA----GCGCGCCgACacCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 186508 | 0.66 | 0.857471 |
Target: 5'- gCGGCaAGua-GCGCGaGCUGUGG-CGCc -3' miRNA: 3'- -GCUGcUCuagCGCGC-CGACACCgGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 141754 | 0.66 | 0.857471 |
Target: 5'- cCGGCGccaguGGAUgCGCGaaGCUGcgcaGGCCGCc -3' miRNA: 3'- -GCUGC-----UCUA-GCGCgcCGACa---CCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 130848 | 0.66 | 0.864643 |
Target: 5'- aCGACGAGcgCGgGUcacaaGCUGUcacuGCCGCg -3' miRNA: 3'- -GCUGCUCuaGCgCGc----CGACAc---CGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 217374 | 0.66 | 0.876408 |
Target: 5'- uGGCGGGGUUGCGCaGuGCUacggugguucccugGUGGCgcUGCa -3' miRNA: 3'- gCUGCUCUAGCGCG-C-CGA--------------CACCG--GCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 196243 | 0.66 | 0.864643 |
Target: 5'- aCGGCGuGggCGCGaCGgaccugcgucaGCUGUcGCCGCg -3' miRNA: 3'- -GCUGCuCuaGCGC-GC-----------CGACAcCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 51559 | 0.66 | 0.868858 |
Target: 5'- aCGGgGGGGUgGUgGCGGCggaggacggagggGUGGCgGCg -3' miRNA: 3'- -GCUgCUCUAgCG-CGCCGa------------CACCGgCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 140466 | 0.66 | 0.87163 |
Target: 5'- gCGACGuGGagGCcCuGUUGUGGCUGCu -3' miRNA: 3'- -GCUGCuCUagCGcGcCGACACCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 144172 | 0.66 | 0.87163 |
Target: 5'- gCGcCGAGAUCGCcgaGGCccuggagcgcGUGGCCGa -3' miRNA: 3'- -GCuGCUCUAGCGcg-CCGa---------CACCGGCg -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 152978 | 0.67 | 0.845623 |
Target: 5'- aCGcACG-GGUCGCGCagcaccuggugcauGCUcUGGCCGCg -3' miRNA: 3'- -GC-UGCuCUAGCGCGc-------------CGAcACCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 104257 | 0.67 | 0.825445 |
Target: 5'- gGGCGAGAgcacgggCGUGCGGaagagaugccgGUagagcGGCCGCg -3' miRNA: 3'- gCUGCUCUa------GCGCGCCga---------CA-----CCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 109305 | 0.67 | 0.81902 |
Target: 5'- aCGACGAGGUggacCGCuggauccggcacGCGGCcGgcguagaacGGCCGCa -3' miRNA: 3'- -GCUGCUCUA----GCG------------CGCCGaCa--------CCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 71645 | 0.67 | 0.834895 |
Target: 5'- gGACGAGGaggacgUCGCugcuaaaccgccGCGcGCcugcugcacaaUGUGGCCGCc -3' miRNA: 3'- gCUGCUCU------AGCG------------CGC-CG-----------ACACCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 106161 | 0.67 | 0.850118 |
Target: 5'- gGGCGcAGAUaccggGCGCGuGCacGUaGGCCGCg -3' miRNA: 3'- gCUGC-UCUAg----CGCGC-CGa-CA-CCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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