miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 3' -59.5 NC_006273.1 + 110991 0.93 0.030761
Target:  5'- aCGACGAGAUCGCGCGGCUGUcGG-CGCu -3'
miRNA:   3'- -GCUGCUCUAGCGCGCCGACA-CCgGCG- -5'
29853 3' -59.5 NC_006273.1 + 1609 0.81 0.190132
Target:  5'- gGGCGAGGUgGUGCGGCUGUaccGCUGCa -3'
miRNA:   3'- gCUGCUCUAgCGCGCCGACAc--CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 196502 0.81 0.190132
Target:  5'- gGGCGAGGUgGUGCGGCUGUaccGCUGCa -3'
miRNA:   3'- gCUGCUCUAgCGCGCCGACAc--CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 148835 0.78 0.286586
Target:  5'- cCGGCGGcGAUCGuCGCuGGCUGUuGCCGCc -3'
miRNA:   3'- -GCUGCU-CUAGC-GCG-CCGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 161667 0.77 0.326372
Target:  5'- gCGACGGGGUCgGCGCucugccGGCUGcGGCgGCa -3'
miRNA:   3'- -GCUGCUCUAG-CGCG------CCGACaCCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 105284 0.76 0.36255
Target:  5'- aGGCuGAGGUCGCGCGGCaGgcaGGCCa- -3'
miRNA:   3'- gCUG-CUCUAGCGCGCCGaCa--CCGGcg -5'
29853 3' -59.5 NC_006273.1 + 196847 0.74 0.425977
Target:  5'- uGGCuGGGUUGCGCGGCgg-GGCCGg -3'
miRNA:   3'- gCUGcUCUAGCGCGCCGacaCCGGCg -5'
29853 3' -59.5 NC_006273.1 + 1955 0.74 0.425977
Target:  5'- uGGCuGGGUUGCGCGGCgg-GGCCGg -3'
miRNA:   3'- gCUGcUCUAGCGCGCCGacaCCGGCg -5'
29853 3' -59.5 NC_006273.1 + 61574 0.74 0.425977
Target:  5'- uCGGCcGGGUCGCGCGGCcGUuuGGCCa- -3'
miRNA:   3'- -GCUGcUCUAGCGCGCCGaCA--CCGGcg -5'
29853 3' -59.5 NC_006273.1 + 114084 0.74 0.442837
Target:  5'- uCGGCGAGAgCGgGCGGCgGUGGUgGg -3'
miRNA:   3'- -GCUGCUCUaGCgCGCCGaCACCGgCg -5'
29853 3' -59.5 NC_006273.1 + 138738 0.74 0.460067
Target:  5'- aGGCGGGAUCGgGCgugaGGUUcUGGCUGCa -3'
miRNA:   3'- gCUGCUCUAGCgCG----CCGAcACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 102318 0.74 0.468815
Target:  5'- gGGC-AGGUCGUGCGGCggGUGGUgGUg -3'
miRNA:   3'- gCUGcUCUAGCGCGCCGa-CACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 104514 0.73 0.48656
Target:  5'- uCGGCGgccGGGUCGCGCGGCagugacagcuUGUGacCCGCg -3'
miRNA:   3'- -GCUGC---UCUAGCGCGCCG----------ACACc-GGCG- -5'
29853 3' -59.5 NC_006273.1 + 103739 0.73 0.504617
Target:  5'- --cCGAGA-CGCGCGGCacaaUGGCCGUa -3'
miRNA:   3'- gcuGCUCUaGCGCGCCGac--ACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 15133 0.73 0.512837
Target:  5'- uGACGGGAcgUC-CGCGGCcgggacgcaguuuUGUGGCCGa -3'
miRNA:   3'- gCUGCUCU--AGcGCGCCG-------------ACACCGGCg -5'
29853 3' -59.5 NC_006273.1 + 103188 0.73 0.522957
Target:  5'- uGACGgagcAGGUCGCGCGGaaagaGGCUGCg -3'
miRNA:   3'- gCUGC----UCUAGCGCGCCgaca-CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 120613 0.72 0.532224
Target:  5'- aGACGuGGUCGCGCcgaucGCUGUaGGCCa- -3'
miRNA:   3'- gCUGCuCUAGCGCGc----CGACA-CCGGcg -5'
29853 3' -59.5 NC_006273.1 + 98196 0.72 0.550927
Target:  5'- gCGACGAGcUCGCugaGCGGCaGcGGCgGCa -3'
miRNA:   3'- -GCUGCUCuAGCG---CGCCGaCaCCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 192339 0.72 0.560354
Target:  5'- uCGAgGAGuucgaggugcGUUGCGCGGCcGUGGCgCGUc -3'
miRNA:   3'- -GCUgCUC----------UAGCGCGCCGaCACCG-GCG- -5'
29853 3' -59.5 NC_006273.1 + 161676 0.72 0.579336
Target:  5'- -cGCGGGGUCGUgGCGGCUGUG-UCGUu -3'
miRNA:   3'- gcUGCUCUAGCG-CGCCGACACcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.