Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29853 | 3' | -59.5 | NC_006273.1 | + | 228470 | 0.71 | 0.608045 |
Target: 5'- uCGACGGGcUCG-GCGGCUGcacGCCGUu -3' miRNA: 3'- -GCUGCUCuAGCgCGCCGACac-CGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 132256 | 0.71 | 0.616693 |
Target: 5'- uGAcCGAGAcCGUGUGGCUacacgacgacgacGUGGCCaGCa -3' miRNA: 3'- gCU-GCUCUaGCGCGCCGA-------------CACCGG-CG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 196622 | 0.71 | 0.627274 |
Target: 5'- gGACGGGAgcugCGC-CGGCgGUgGGCCGg -3' miRNA: 3'- gCUGCUCUa---GCGcGCCGaCA-CCGGCg -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 162775 | 0.71 | 0.627274 |
Target: 5'- gGugGuGGUgGCgGCGGCaGcGGCCGCa -3' miRNA: 3'- gCugCuCUAgCG-CGCCGaCaCCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 7686 | 0.71 | 0.627274 |
Target: 5'- cCGAUGGuauGggCG-GCGGCggcaGUGGCCGCg -3' miRNA: 3'- -GCUGCU---CuaGCgCGCCGa---CACCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 208021 | 0.71 | 0.627274 |
Target: 5'- uGACGAa--CGCGUcuGGCUGUGuGCCGUu -3' miRNA: 3'- gCUGCUcuaGCGCG--CCGACAC-CGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 1730 | 0.71 | 0.627274 |
Target: 5'- gGACGGGAgcugCGC-CGGCgGUgGGCCGg -3' miRNA: 3'- gCUGCUCUa---GCGcGCCGaCA-CCGGCg -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 197307 | 0.71 | 0.636896 |
Target: 5'- cCGcCGAGGcCGCGCGGC---GGCUGCu -3' miRNA: 3'- -GCuGCUCUaGCGCGCCGacaCCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 2414 | 0.71 | 0.636896 |
Target: 5'- cCGcCGAGGcCGCGCGGC---GGCUGCu -3' miRNA: 3'- -GCuGCUCUaGCGCGCCGacaCCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 165246 | 0.71 | 0.636896 |
Target: 5'- cCGGCGAGccAUCGcCGCacucGCUGUaGCCGCg -3' miRNA: 3'- -GCUGCUC--UAGC-GCGc---CGACAcCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 234486 | 0.71 | 0.640744 |
Target: 5'- gGGCGGGGg-GCGCGGCgacaugccguugcgcUGggccaUGGCCGCg -3' miRNA: 3'- gCUGCUCUagCGCGCCG---------------AC-----ACCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 80381 | 0.7 | 0.656124 |
Target: 5'- -aGCGGGAgCG-GCGGCcGUGGCgGCg -3' miRNA: 3'- gcUGCUCUaGCgCGCCGaCACCGgCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 134881 | 0.7 | 0.656124 |
Target: 5'- aGGCGGGAUCGcCGUGuGCcaaccgGGCUGCg -3' miRNA: 3'- gCUGCUCUAGC-GCGC-CGaca---CCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 33928 | 0.7 | 0.656124 |
Target: 5'- gGACGGGGccacgUCGC-CGGCUGUgaGGUgGCg -3' miRNA: 3'- gCUGCUCU-----AGCGcGCCGACA--CCGgCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 204302 | 0.7 | 0.665716 |
Target: 5'- aGACGGGGUCGaCGaGGCUGgugagcgcgaaGGCCGg -3' miRNA: 3'- gCUGCUCUAGC-GCgCCGACa----------CCGGCg -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 21988 | 0.7 | 0.675285 |
Target: 5'- uGACG-GAUC-CGaagaucgGGCUGcUGGCCGCg -3' miRNA: 3'- gCUGCuCUAGcGCg------CCGAC-ACCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 116392 | 0.7 | 0.675285 |
Target: 5'- gGACGAGcagcaGUCGCa-GGCUGUGG-CGCc -3' miRNA: 3'- gCUGCUC-----UAGCGcgCCGACACCgGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 61274 | 0.7 | 0.675285 |
Target: 5'- -aGCGcGGcgCGCGCGGCcGaGGCCGUg -3' miRNA: 3'- gcUGC-UCuaGCGCGCCGaCaCCGGCG- -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 158249 | 0.7 | 0.675285 |
Target: 5'- gCGACGGcGGuUCGcCGUGGUUGuUGGCCGa -3' miRNA: 3'- -GCUGCU-CU-AGC-GCGCCGAC-ACCGGCg -5' |
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29853 | 3' | -59.5 | NC_006273.1 | + | 186530 | 0.7 | 0.675285 |
Target: 5'- aCGACGGacUCGCcccUGGCuacgcaccUGUGGCCGCa -3' miRNA: 3'- -GCUGCUcuAGCGc--GCCG--------ACACCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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