miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 3' -59.5 NC_006273.1 + 144172 0.66 0.87163
Target:  5'- gCGcCGAGAUCGCcgaGGCccuggagcgcGUGGCCGa -3'
miRNA:   3'- -GCuGCUCUAGCGcg-CCGa---------CACCGGCg -5'
29853 3' -59.5 NC_006273.1 + 161962 0.66 0.87094
Target:  5'- uGGCGAGcgcgcuccgggccAUCGCGaccgcagucugGGCcGUGGCUGCc -3'
miRNA:   3'- gCUGCUC-------------UAGCGCg----------CCGaCACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 51559 0.66 0.868858
Target:  5'- aCGGgGGGGUgGUgGCGGCggaggacggagggGUGGCgGCg -3'
miRNA:   3'- -GCUgCUCUAgCG-CGCCGa------------CACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 36131 0.66 0.86746
Target:  5'- aGuACGGGAUgGUGCGGaagucauacacgcaUGUGGCCu- -3'
miRNA:   3'- gC-UGCUCUAgCGCGCCg-------------ACACCGGcg -5'
29853 3' -59.5 NC_006273.1 + 108051 0.66 0.864643
Target:  5'- -uACGuGAaCGCGCugcacgaccaccGGCUGUGGCCc- -3'
miRNA:   3'- gcUGCuCUaGCGCG------------CCGACACCGGcg -5'
29853 3' -59.5 NC_006273.1 + 130848 0.66 0.864643
Target:  5'- aCGACGAGcgCGgGUcacaaGCUGUcacuGCCGCg -3'
miRNA:   3'- -GCUGCUCuaGCgCGc----CGACAc---CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 196243 0.66 0.864643
Target:  5'- aCGGCGuGggCGCGaCGgaccugcgucaGCUGUcGCCGCg -3'
miRNA:   3'- -GCUGCuCuaGCGC-GC-----------CGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 1350 0.66 0.864643
Target:  5'- aCGGCGuGggCGCGaCGgaccugcgucaGCUGUcGCCGCg -3'
miRNA:   3'- -GCUGCuCuaGCGC-GC-----------CGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 119157 0.66 0.857471
Target:  5'- -aGCGAGAagaugUCGCGCGGaca--GCCGCu -3'
miRNA:   3'- gcUGCUCU-----AGCGCGCCgacacCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 193634 0.66 0.857471
Target:  5'- cCGuCGGGAcagCGCGUGGgacgUGaGGCCGCu -3'
miRNA:   3'- -GCuGCUCUa--GCGCGCCg---ACaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 207305 0.66 0.857471
Target:  5'- uCGACG-GAUCG-GCGGUgGUgacGGCgGCg -3'
miRNA:   3'- -GCUGCuCUAGCgCGCCGaCA---CCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 141754 0.66 0.857471
Target:  5'- cCGGCGccaguGGAUgCGCGaaGCUGcgcaGGCCGCc -3'
miRNA:   3'- -GCUGC-----UCUA-GCGCgcCGACa---CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 186508 0.66 0.857471
Target:  5'- gCGGCaAGua-GCGCGaGCUGUGG-CGCc -3'
miRNA:   3'- -GCUGcUCuagCGCGC-CGACACCgGCG- -5'
29853 3' -59.5 NC_006273.1 + 1301 0.66 0.856744
Target:  5'- gGACGgccguacGGAUucuaCGCGCGGgUGacGCCGCg -3'
miRNA:   3'- gCUGC-------UCUA----GCGCGCCgACacCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 196194 0.66 0.856744
Target:  5'- gGACGgccguacGGAUucuaCGCGCGGgUGacGCCGCg -3'
miRNA:   3'- gCUGC-------UCUA----GCGCGCCgACacCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 170183 0.67 0.853081
Target:  5'- gGugGAGAccaaaCGCGCGGCgaucucagccucugGUacGGUCGCc -3'
miRNA:   3'- gCugCUCUa----GCGCGCCGa-------------CA--CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 89950 0.67 0.850118
Target:  5'- aCGAUGAGcaggaGCGGgaUGUGGUCGCa -3'
miRNA:   3'- -GCUGCUCuagcgCGCCg-ACACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 84029 0.67 0.850118
Target:  5'- -cGCGAGAaggCGCGcCGGCgccaaaUGaGCCGCg -3'
miRNA:   3'- gcUGCUCUa--GCGC-GCCGac----AC-CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 147890 0.67 0.850118
Target:  5'- cCGACau--UCGCGuCGGCgcccgGGCCGCc -3'
miRNA:   3'- -GCUGcucuAGCGC-GCCGaca--CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 18803 0.67 0.850118
Target:  5'- uCGACcgcGGAUUGCGCGGCgaGUGucgguuggaggaGCUGCc -3'
miRNA:   3'- -GCUGc--UCUAGCGCGCCGa-CAC------------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.