miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 3' -59.5 NC_006273.1 + 106161 0.67 0.850118
Target:  5'- gGGCGcAGAUaccggGCGCGuGCacGUaGGCCGCg -3'
miRNA:   3'- gCUGC-UCUAg----CGCGC-CGa-CA-CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 34224 0.67 0.850118
Target:  5'- uGACGGGcaaCcCGCGGCacagGGCCGCc -3'
miRNA:   3'- gCUGCUCua-GcGCGCCGaca-CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 81582 0.67 0.849373
Target:  5'- cCGA-GAGGUCcucgcagGCgGCGGCcGcGGCCGCg -3'
miRNA:   3'- -GCUgCUCUAG-------CG-CGCCGaCaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 152978 0.67 0.845623
Target:  5'- aCGcACG-GGUCGCGCagcaccuggugcauGCUcUGGCCGCg -3'
miRNA:   3'- -GC-UGCuCUAGCGCGc-------------CGAcACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 189735 0.67 0.842591
Target:  5'- cCGAUGAGGacguggcacaguUCGCgGUGGCgcucgUGUGGCaGCa -3'
miRNA:   3'- -GCUGCUCU------------AGCG-CGCCG-----ACACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 143748 0.67 0.842591
Target:  5'- aCGAauugcUGGGAUCGuUGCGGUUgucgccuuugGUGGuCCGCa -3'
miRNA:   3'- -GCU-----GCUCUAGC-GCGCCGA----------CACC-GGCG- -5'
29853 3' -59.5 NC_006273.1 + 71645 0.67 0.834895
Target:  5'- gGACGAGGaggacgUCGCugcuaaaccgccGCGcGCcugcugcacaaUGUGGCCGCc -3'
miRNA:   3'- gCUGCUCU------AGCG------------CGC-CG-----------ACACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 203373 0.67 0.834895
Target:  5'- uGAUGAGuuucUgGCGCaGGUggGUGGCgCGCg -3'
miRNA:   3'- gCUGCUCu---AgCGCG-CCGa-CACCG-GCG- -5'
29853 3' -59.5 NC_006273.1 + 199476 0.67 0.834895
Target:  5'- aCGGCG-GGUCGUugGCucccGCUGUgcuGGCCGCc -3'
miRNA:   3'- -GCUGCuCUAGCG--CGc---CGACA---CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 37706 0.67 0.827036
Target:  5'- ---gGAGAUCGUGCacaaagcaGCUGUcGCCGCg -3'
miRNA:   3'- gcugCUCUAGCGCGc-------CGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 144390 0.67 0.826241
Target:  5'- -uACGAGGccuUCGUcaGCGGCUGUcugcccgGcGCCGCg -3'
miRNA:   3'- gcUGCUCU---AGCG--CGCCGACA-------C-CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 104257 0.67 0.825445
Target:  5'- gGGCGAGAgcacgggCGUGCGGaagagaugccgGUagagcGGCCGCg -3'
miRNA:   3'- gCUGCUCUa------GCGCGCCga---------CA-----CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 170073 0.67 0.822245
Target:  5'- aCGAUGGGGUCgggcaGCggagguaaggaagguGCGGCgGUGGUCGUu -3'
miRNA:   3'- -GCUGCUCUAG-----CG---------------CGCCGaCACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 109305 0.67 0.81902
Target:  5'- aCGACGAGGUggacCGCuggauccggcacGCGGCcGgcguagaacGGCCGCa -3'
miRNA:   3'- -GCUGCUCUA----GCG------------CGCCGaCa--------CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 32607 0.67 0.81902
Target:  5'- uGACGcAGcagCGCGCGGCUcacGUagcaGGCCGa -3'
miRNA:   3'- gCUGC-UCua-GCGCGCCGA---CA----CCGGCg -5'
29853 3' -59.5 NC_006273.1 + 162364 0.67 0.81902
Target:  5'- gGugGAGG-CG-GCGGCgcuaGUGGUgGCg -3'
miRNA:   3'- gCugCUCUaGCgCGCCGa---CACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 100394 0.67 0.81902
Target:  5'- -aACGAGuUCaugGCGGCUGUGGCggguCGCg -3'
miRNA:   3'- gcUGCUCuAGcg-CGCCGACACCG----GCG- -5'
29853 3' -59.5 NC_006273.1 + 68787 0.67 0.81902
Target:  5'- gCGGCGGcGAUgGCGgGGCUGguugcuuuuccUGGCCc- -3'
miRNA:   3'- -GCUGCU-CUAgCGCgCCGAC-----------ACCGGcg -5'
29853 3' -59.5 NC_006273.1 + 145550 0.67 0.81902
Target:  5'- aCGACGGGGUucCGgGCGGCggUGcUGGCgGg -3'
miRNA:   3'- -GCUGCUCUA--GCgCGCCG--AC-ACCGgCg -5'
29853 3' -59.5 NC_006273.1 + 234846 0.67 0.816586
Target:  5'- cCGGCGGcGGUCggggugugucggggGCGCGGCgggGUGGgUGUg -3'
miRNA:   3'- -GCUGCU-CUAG--------------CGCGCCGa--CACCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.