miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 3' -59.5 NC_006273.1 + 15 0.67 0.816586
Target:  5'- cCGGCGGcGGUCggggugugucggggGCGCGGCgggGUGGgUGUg -3'
miRNA:   3'- -GCUGCU-CUAG--------------CGCGCCGa--CACCgGCG- -5'
29853 3' -59.5 NC_006273.1 + 1301 0.66 0.856744
Target:  5'- gGACGgccguacGGAUucuaCGCGCGGgUGacGCCGCg -3'
miRNA:   3'- gCUGC-------UCUA----GCGCGCCgACacCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 1350 0.66 0.864643
Target:  5'- aCGGCGuGggCGCGaCGgaccugcgucaGCUGUcGCCGCg -3'
miRNA:   3'- -GCUGCuCuaGCGC-GC-----------CGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 1609 0.81 0.190132
Target:  5'- gGGCGAGGUgGUGCGGCUGUaccGCUGCa -3'
miRNA:   3'- gCUGCUCUAgCGCGCCGACAc--CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 1730 0.71 0.627274
Target:  5'- gGACGGGAgcugCGC-CGGCgGUgGGCCGg -3'
miRNA:   3'- gCUGCUCUa---GCGcGCCGaCA-CCGGCg -5'
29853 3' -59.5 NC_006273.1 + 1955 0.74 0.425977
Target:  5'- uGGCuGGGUUGCGCGGCgg-GGCCGg -3'
miRNA:   3'- gCUGcUCUAGCGCGCCGacaCCGGCg -5'
29853 3' -59.5 NC_006273.1 + 2414 0.71 0.636896
Target:  5'- cCGcCGAGGcCGCGCGGC---GGCUGCu -3'
miRNA:   3'- -GCuGCUCUaGCGCGCCGacaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 7686 0.71 0.627274
Target:  5'- cCGAUGGuauGggCG-GCGGCggcaGUGGCCGCg -3'
miRNA:   3'- -GCUGCU---CuaGCgCGCCGa---CACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 15133 0.73 0.512837
Target:  5'- uGACGGGAcgUC-CGCGGCcgggacgcaguuuUGUGGCCGa -3'
miRNA:   3'- gCUGCUCU--AGcGCGCCG-------------ACACCGGCg -5'
29853 3' -59.5 NC_006273.1 + 17379 0.67 0.810854
Target:  5'- aGAgGAGGggaaGaCGCGGUUGccgcgcguaUGGCCGCc -3'
miRNA:   3'- gCUgCUCUag--C-GCGCCGAC---------ACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 18803 0.67 0.850118
Target:  5'- uCGACcgcGGAUUGCGCGGCgaGUGucgguuggaggaGCUGCc -3'
miRNA:   3'- -GCUGc--UCUAGCGCGCCGa-CAC------------CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 21458 0.68 0.776828
Target:  5'- --cCGAGAUCGUGCGuucGCUgGUGGUggaCGCa -3'
miRNA:   3'- gcuGCUCUAGCGCGC---CGA-CACCG---GCG- -5'
29853 3' -59.5 NC_006273.1 + 21988 0.7 0.675285
Target:  5'- uGACG-GAUC-CGaagaucgGGCUGcUGGCCGCg -3'
miRNA:   3'- gCUGCuCUAGcGCg------CCGAC-ACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 22944 0.69 0.731779
Target:  5'- gGACGAGAUaacgGCGUGGCUuuuacuUGGCaGCa -3'
miRNA:   3'- gCUGCUCUAg---CGCGCCGAc-----ACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 24397 0.69 0.722509
Target:  5'- aCGACGAcuauGAUgaaGCGGCcgugGUGGCCGUg -3'
miRNA:   3'- -GCUGCU----CUAgcgCGCCGa---CACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 29282 0.69 0.740971
Target:  5'- -cACGcGAUCGUagauGCcGUUGUGGCCGCu -3'
miRNA:   3'- gcUGCuCUAGCG----CGcCGACACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 31725 0.66 0.890805
Target:  5'- --cCGAGAaagggauaguggcUCGgGuCGGCUGgucgGGCCGUc -3'
miRNA:   3'- gcuGCUCU-------------AGCgC-GCCGACa---CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 32607 0.67 0.81902
Target:  5'- uGACGcAGcagCGCGCGGCUcacGUagcaGGCCGa -3'
miRNA:   3'- gCUGC-UCua-GCGCGCCGA---CA----CCGGCg -5'
29853 3' -59.5 NC_006273.1 + 33928 0.7 0.656124
Target:  5'- gGACGGGGccacgUCGC-CGGCUGUgaGGUgGCg -3'
miRNA:   3'- gCUGCUCU-----AGCGcGCCGACA--CCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 34224 0.67 0.850118
Target:  5'- uGACGGGcaaCcCGCGGCacagGGCCGCc -3'
miRNA:   3'- gCUGCUCua-GcGCGCCGaca-CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.