miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 3' -59.5 NC_006273.1 + 34529 0.66 0.878427
Target:  5'- -uGCG-GAUCGgGCGGCaagGGCaCGCc -3'
miRNA:   3'- gcUGCuCUAGCgCGCCGacaCCG-GCG- -5'
29853 3' -59.5 NC_006273.1 + 36131 0.66 0.86746
Target:  5'- aGuACGGGAUgGUGCGGaagucauacacgcaUGUGGCCu- -3'
miRNA:   3'- gC-UGCUCUAgCGCGCCg-------------ACACCGGcg -5'
29853 3' -59.5 NC_006273.1 + 37706 0.67 0.827036
Target:  5'- ---gGAGAUCGUGCacaaagcaGCUGUcGCCGCg -3'
miRNA:   3'- gcugCUCUAGCGCGc-------CGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 38593 0.69 0.740971
Target:  5'- uGGCaGAGcgCcUGCGGCUGUG-CCGCc -3'
miRNA:   3'- gCUG-CUCuaGcGCGCCGACACcGGCG- -5'
29853 3' -59.5 NC_006273.1 + 39593 0.69 0.726226
Target:  5'- gGGCGGGGg-GCGCGGCgacaugccguugcgcUGggccaUGGCCGCc -3'
miRNA:   3'- gCUGCUCUagCGCGCCG---------------AC-----ACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 40484 0.7 0.694319
Target:  5'- uCGGCGuGGUCGagGCGGCcc-GGCUGCu -3'
miRNA:   3'- -GCUGCuCUAGCg-CGCCGacaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 42417 0.67 0.810029
Target:  5'- aCGGCGAGcgCGCGCccaaaaaGG-UGUGcGCCGa -3'
miRNA:   3'- -GCUGCUCuaGCGCG-------CCgACAC-CGGCg -5'
29853 3' -59.5 NC_006273.1 + 44784 0.68 0.776828
Target:  5'- ---gGAGAUCGcCGCGGCcGaUGGgCGCc -3'
miRNA:   3'- gcugCUCUAGC-GCGCCGaC-ACCgGCG- -5'
29853 3' -59.5 NC_006273.1 + 44846 0.68 0.759098
Target:  5'- cCGACGGccaAUCGCGUGGCguaggaGUGG-CGCc -3'
miRNA:   3'- -GCUGCUc--UAGCGCGCCGa-----CACCgGCG- -5'
29853 3' -59.5 NC_006273.1 + 45819 0.69 0.740971
Target:  5'- aGAgaAGAUCaugGUGUGGCUGUGGCUcgGCg -3'
miRNA:   3'- gCUgcUCUAG---CGCGCCGACACCGG--CG- -5'
29853 3' -59.5 NC_006273.1 + 49957 0.69 0.750081
Target:  5'- -cGCGAGAguuccUGCGCGGUgcugGUccaccacgucGGCCGCg -3'
miRNA:   3'- gcUGCUCUa----GCGCGCCGa---CA----------CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 51559 0.66 0.868858
Target:  5'- aCGGgGGGGUgGUgGCGGCggaggacggagggGUGGCgGCg -3'
miRNA:   3'- -GCUgCUCUAgCG-CGCCGa------------CACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 61274 0.7 0.675285
Target:  5'- -aGCGcGGcgCGCGCGGCcGaGGCCGUg -3'
miRNA:   3'- gcUGC-UCuaGCGCGCCGaCaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 61574 0.74 0.425977
Target:  5'- uCGGCcGGGUCGCGCGGCcGUuuGGCCa- -3'
miRNA:   3'- -GCUGcUCUAGCGCGCCGaCA--CCGGcg -5'
29853 3' -59.5 NC_006273.1 + 64218 0.69 0.712234
Target:  5'- uCGGCGGGGUCGCGUcaagauuGaCgagGUGaGCCGCa -3'
miRNA:   3'- -GCUGCUCUAGCGCG-------CcGa--CAC-CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 68787 0.67 0.81902
Target:  5'- gCGGCGGcGAUgGCGgGGCUGguugcuuuuccUGGCCc- -3'
miRNA:   3'- -GCUGCU-CUAgCGCgCCGAC-----------ACCGGcg -5'
29853 3' -59.5 NC_006273.1 + 70687 0.66 0.891436
Target:  5'- gGugGAGggCGCGCGGCaacucgagauggUGUacccGGCacccgaGCa -3'
miRNA:   3'- gCugCUCuaGCGCGCCG------------ACA----CCGg-----CG- -5'
29853 3' -59.5 NC_006273.1 + 71645 0.67 0.834895
Target:  5'- gGACGAGGaggacgUCGCugcuaaaccgccGCGcGCcugcugcacaaUGUGGCCGCc -3'
miRNA:   3'- gCUGCUCU------AGCG------------CGC-CG-----------ACACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 80381 0.7 0.656124
Target:  5'- -aGCGGGAgCG-GCGGCcGUGGCgGCg -3'
miRNA:   3'- gcUGCUCUaGCgCGCCGaCACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 80809 0.69 0.703772
Target:  5'- gGACGgagGGGUUGUugGUGGCaacgacGUGGCCGCg -3'
miRNA:   3'- gCUGC---UCUAGCG--CGCCGa-----CACCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.