miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 3' -59.5 NC_006273.1 + 234846 0.67 0.816586
Target:  5'- cCGGCGGcGGUCggggugugucggggGCGCGGCgggGUGGgUGUg -3'
miRNA:   3'- -GCUGCU-CUAG--------------CGCGCCGa--CACCgGCG- -5'
29853 3' -59.5 NC_006273.1 + 234486 0.71 0.640744
Target:  5'- gGGCGGGGg-GCGCGGCgacaugccguugcgcUGggccaUGGCCGCg -3'
miRNA:   3'- gCUGCUCUagCGCGCCG---------------AC-----ACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 229842 0.68 0.785524
Target:  5'- aCGGCGAGAggacgaucuUCGCacGCgGGCUGagccGGaCCGCg -3'
miRNA:   3'- -GCUGCUCU---------AGCG--CG-CCGACa---CC-GGCG- -5'
29853 3' -59.5 NC_006273.1 + 228470 0.71 0.608045
Target:  5'- uCGACGGGcUCG-GCGGCUGcacGCCGUu -3'
miRNA:   3'- -GCUGCUCuAGCgCGCCGACac-CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 218166 0.69 0.726226
Target:  5'- aCGACGuGGuuaucuucgucgucgUCGCGUGGCaUG-GGCgGCg -3'
miRNA:   3'- -GCUGCuCU---------------AGCGCGCCG-ACaCCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 217374 0.66 0.876408
Target:  5'- uGGCGGGGUUGCGCaGuGCUacggugguucccugGUGGCgcUGCa -3'
miRNA:   3'- gCUGCUCUAGCGCG-C-CGA--------------CACCG--GCG- -5'
29853 3' -59.5 NC_006273.1 + 208061 0.68 0.768016
Target:  5'- uGACGAcAUCuCGaGGUcaUGUGGCCGCu -3'
miRNA:   3'- gCUGCUcUAGcGCgCCG--ACACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 208021 0.71 0.627274
Target:  5'- uGACGAa--CGCGUcuGGCUGUGuGCCGUu -3'
miRNA:   3'- gCUGCUcuaGCGCG--CCGACAC-CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 207305 0.66 0.857471
Target:  5'- uCGACG-GAUCG-GCGGUgGUgacGGCgGCg -3'
miRNA:   3'- -GCUGCuCUAGCgCGCCGaCA---CCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 204302 0.7 0.665716
Target:  5'- aGACGGGGUCGaCGaGGCUGgugagcgcgaaGGCCGg -3'
miRNA:   3'- gCUGCUCUAGC-GCgCCGACa----------CCGGCg -5'
29853 3' -59.5 NC_006273.1 + 203373 0.67 0.834895
Target:  5'- uGAUGAGuuucUgGCGCaGGUggGUGGCgCGCg -3'
miRNA:   3'- gCUGCUCu---AgCGCG-CCGa-CACCG-GCG- -5'
29853 3' -59.5 NC_006273.1 + 202034 0.68 0.78466
Target:  5'- gGACGcgccgcaGGAUCGCacGCGGCU---GCCGCa -3'
miRNA:   3'- gCUGC-------UCUAGCG--CGCCGAcacCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 199476 0.67 0.834895
Target:  5'- aCGGCG-GGUCGUugGCucccGCUGUgcuGGCCGCc -3'
miRNA:   3'- -GCUGCuCUAGCG--CGc---CGACA---CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 197307 0.71 0.636896
Target:  5'- cCGcCGAGGcCGCGCGGC---GGCUGCu -3'
miRNA:   3'- -GCuGCUCUaGCGCGCCGacaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 197041 0.69 0.713171
Target:  5'- uGACGAGcg-GCaGCGGCgacgacgGUGGCgGCg -3'
miRNA:   3'- gCUGCUCuagCG-CGCCGa------CACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 196847 0.74 0.425977
Target:  5'- uGGCuGGGUUGCGCGGCgg-GGCCGg -3'
miRNA:   3'- gCUGcUCUAGCGCGCCGacaCCGGCg -5'
29853 3' -59.5 NC_006273.1 + 196622 0.71 0.627274
Target:  5'- gGACGGGAgcugCGC-CGGCgGUgGGCCGg -3'
miRNA:   3'- gCUGCUCUa---GCGcGCCGaCA-CCGGCg -5'
29853 3' -59.5 NC_006273.1 + 196502 0.81 0.190132
Target:  5'- gGGCGAGGUgGUGCGGCUGUaccGCUGCa -3'
miRNA:   3'- gCUGCUCUAgCGCGCCGACAc--CGGCG- -5'
29853 3' -59.5 NC_006273.1 + 196243 0.66 0.864643
Target:  5'- aCGGCGuGggCGCGaCGgaccugcgucaGCUGUcGCCGCg -3'
miRNA:   3'- -GCUGCuCuaGCGC-GC-----------CGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 196194 0.66 0.856744
Target:  5'- gGACGgccguacGGAUucuaCGCGCGGgUGacGCCGCg -3'
miRNA:   3'- gCUGC-------UCUA----GCGCGCCgACacCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.