miRNA display CGI


Results 1 - 20 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 3' -59.5 NC_006273.1 + 40484 0.7 0.694319
Target:  5'- uCGGCGuGGUCGagGCGGCcc-GGCUGCu -3'
miRNA:   3'- -GCUGCuCUAGCg-CGCCGacaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 165246 0.71 0.636896
Target:  5'- cCGGCGAGccAUCGcCGCacucGCUGUaGCCGCg -3'
miRNA:   3'- -GCUGCUC--UAGC-GCGc---CGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 197307 0.71 0.636896
Target:  5'- cCGcCGAGGcCGCGCGGC---GGCUGCu -3'
miRNA:   3'- -GCuGCUCUaGCGCGCCGacaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 234486 0.71 0.640744
Target:  5'- gGGCGGGGg-GCGCGGCgacaugccguugcgcUGggccaUGGCCGCg -3'
miRNA:   3'- gCUGCUCUagCGCGCCG---------------AC-----ACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 33928 0.7 0.656124
Target:  5'- gGACGGGGccacgUCGC-CGGCUGUgaGGUgGCg -3'
miRNA:   3'- gCUGCUCU-----AGCGcGCCGACA--CCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 134881 0.7 0.656124
Target:  5'- aGGCGGGAUCGcCGUGuGCcaaccgGGCUGCg -3'
miRNA:   3'- gCUGCUCUAGC-GCGC-CGaca---CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 21988 0.7 0.675285
Target:  5'- uGACG-GAUC-CGaagaucgGGCUGcUGGCCGCg -3'
miRNA:   3'- gCUGCuCUAGcGCg------CCGAC-ACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 116392 0.7 0.675285
Target:  5'- gGACGAGcagcaGUCGCa-GGCUGUGG-CGCc -3'
miRNA:   3'- gCUGCUC-----UAGCGcgCCGACACCgGCG- -5'
29853 3' -59.5 NC_006273.1 + 61274 0.7 0.675285
Target:  5'- -aGCGcGGcgCGCGCGGCcGaGGCCGUg -3'
miRNA:   3'- gcUGC-UCuaGCGCGCCGaCaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 7686 0.71 0.627274
Target:  5'- cCGAUGGuauGggCG-GCGGCggcaGUGGCCGCg -3'
miRNA:   3'- -GCUGCU---CuaGCgCGCCGa---CACCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 196622 0.71 0.627274
Target:  5'- gGACGGGAgcugCGC-CGGCgGUgGGCCGg -3'
miRNA:   3'- gCUGCUCUa---GCGcGCCGaCA-CCGGCg -5'
29853 3' -59.5 NC_006273.1 + 162775 0.71 0.627274
Target:  5'- gGugGuGGUgGCgGCGGCaGcGGCCGCa -3'
miRNA:   3'- gCugCuCUAgCG-CGCCGaCaCCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 148835 0.78 0.286586
Target:  5'- cCGGCGGcGAUCGuCGCuGGCUGUuGCCGCc -3'
miRNA:   3'- -GCUGCU-CUAGC-GCG-CCGACAcCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 161667 0.77 0.326372
Target:  5'- gCGACGGGGUCgGCGCucugccGGCUGcGGCgGCa -3'
miRNA:   3'- -GCUGCUCUAG-CGCG------CCGACaCCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 196847 0.74 0.425977
Target:  5'- uGGCuGGGUUGCGCGGCgg-GGCCGg -3'
miRNA:   3'- gCUGcUCUAGCGCGCCGacaCCGGCg -5'
29853 3' -59.5 NC_006273.1 + 61574 0.74 0.425977
Target:  5'- uCGGCcGGGUCGCGCGGCcGUuuGGCCa- -3'
miRNA:   3'- -GCUGcUCUAGCGCGCCGaCA--CCGGcg -5'
29853 3' -59.5 NC_006273.1 + 114084 0.74 0.442837
Target:  5'- uCGGCGAGAgCGgGCGGCgGUGGUgGg -3'
miRNA:   3'- -GCUGCUCUaGCgCGCCGaCACCGgCg -5'
29853 3' -59.5 NC_006273.1 + 102318 0.74 0.468815
Target:  5'- gGGC-AGGUCGUGCGGCggGUGGUgGUg -3'
miRNA:   3'- gCUGcUCUAGCGCGCCGa-CACCGgCG- -5'
29853 3' -59.5 NC_006273.1 + 103188 0.73 0.522957
Target:  5'- uGACGgagcAGGUCGCGCGGaaagaGGCUGCg -3'
miRNA:   3'- gCUGC----UCUAGCGCGCCgaca-CCGGCG- -5'
29853 3' -59.5 NC_006273.1 + 228470 0.71 0.608045
Target:  5'- uCGACGGGcUCG-GCGGCUGcacGCCGUu -3'
miRNA:   3'- -GCUGCUCuAGCgCGCCGACac-CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.