miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29853 5' -54.9 NC_006273.1 + 206002 0.66 0.977537
Target:  5'- cCUGCGACGuGC-GcGAcGACCgcuaCAUCCGg -3'
miRNA:   3'- -GACGCUGU-CGaC-CUaCUGGa---GUAGGC- -5'
29853 5' -54.9 NC_006273.1 + 148678 0.66 0.975121
Target:  5'- uCUGCGcgcaGCuGCUGGAgcuCCUCGUCg- -3'
miRNA:   3'- -GACGC----UGuCGACCUacuGGAGUAGgc -5'
29853 5' -54.9 NC_006273.1 + 58474 0.66 0.975121
Target:  5'- gUGUGAUgaAGCUGGAgagcUGGgCUCAcgucuUCCGg -3'
miRNA:   3'- gACGCUG--UCGACCU----ACUgGAGU-----AGGC- -5'
29853 5' -54.9 NC_006273.1 + 68424 0.66 0.975121
Target:  5'- -aGCGGCGGaCUGGAcgUGACCacccCCGa -3'
miRNA:   3'- gaCGCUGUC-GACCU--ACUGGaguaGGC- -5'
29853 5' -54.9 NC_006273.1 + 193086 0.66 0.972521
Target:  5'- gCUG-GACGGCUGGAgcugGAUCgccaGUCCc -3'
miRNA:   3'- -GACgCUGUCGACCUa---CUGGag--UAGGc -5'
29853 5' -54.9 NC_006273.1 + 21376 0.66 0.972521
Target:  5'- -gGCGACcGuCUGGAggUGGCCUgCAUCUu -3'
miRNA:   3'- gaCGCUGuC-GACCU--ACUGGA-GUAGGc -5'
29853 5' -54.9 NC_006273.1 + 44648 0.66 0.969441
Target:  5'- -gGCGGCAGCUGG-UGgcguucuGCCUggagaaggugugCGUCCGc -3'
miRNA:   3'- gaCGCUGUCGACCuAC-------UGGA------------GUAGGC- -5'
29853 5' -54.9 NC_006273.1 + 125386 0.66 0.966743
Target:  5'- uUGCuGCAGCgGGAUGAUUUCG-CCu -3'
miRNA:   3'- gACGcUGUCGaCCUACUGGAGUaGGc -5'
29853 5' -54.9 NC_006273.1 + 101367 0.66 0.966743
Target:  5'- -gGCGGCGGCc--GUGcgcaucgccuGCCUCAUCCGa -3'
miRNA:   3'- gaCGCUGUCGaccUAC----------UGGAGUAGGC- -5'
29853 5' -54.9 NC_006273.1 + 182148 0.67 0.963553
Target:  5'- -cGCGugAGUUGGGUGguucACCgUCAggugcUCCGa -3'
miRNA:   3'- gaCGCugUCGACCUAC----UGG-AGU-----AGGC- -5'
29853 5' -54.9 NC_006273.1 + 148654 0.67 0.963553
Target:  5'- -cGCGGCGGCUGaGGUGcUCUCGUggugcggccugcCCGa -3'
miRNA:   3'- gaCGCUGUCGAC-CUACuGGAGUA------------GGC- -5'
29853 5' -54.9 NC_006273.1 + 37300 0.67 0.960156
Target:  5'- uUGCGACGGCcGGAcauGCCggcaGUCCGc -3'
miRNA:   3'- gACGCUGUCGaCCUac-UGGag--UAGGC- -5'
29853 5' -54.9 NC_006273.1 + 162821 0.67 0.956546
Target:  5'- -cGCcGCAGCUGcGG-GGCCUCAUCg- -3'
miRNA:   3'- gaCGcUGUCGAC-CUaCUGGAGUAGgc -5'
29853 5' -54.9 NC_006273.1 + 185853 0.67 0.956546
Target:  5'- -gGaCGACGGUa-GAUGACCUCGUCUu -3'
miRNA:   3'- gaC-GCUGUCGacCUACUGGAGUAGGc -5'
29853 5' -54.9 NC_006273.1 + 22362 0.67 0.952719
Target:  5'- gUGUGGCAGCUGGcuUGuacCCUCAcggUCUGc -3'
miRNA:   3'- gACGCUGUCGACCu-ACu--GGAGU---AGGC- -5'
29853 5' -54.9 NC_006273.1 + 6497 0.67 0.948673
Target:  5'- gCUGCucGCAGUUGGGcu-CCUCGUCCu -3'
miRNA:   3'- -GACGc-UGUCGACCUacuGGAGUAGGc -5'
29853 5' -54.9 NC_006273.1 + 164628 0.67 0.944403
Target:  5'- -aGCGGgaAGgUGGGgaaGGCCUCGUCCa -3'
miRNA:   3'- gaCGCUg-UCgACCUa--CUGGAGUAGGc -5'
29853 5' -54.9 NC_006273.1 + 44265 0.67 0.944403
Target:  5'- uUGCGAUgagaGGgaGGAUGGCC--GUCCGu -3'
miRNA:   3'- gACGCUG----UCgaCCUACUGGagUAGGC- -5'
29853 5' -54.9 NC_006273.1 + 135199 0.67 0.944403
Target:  5'- gCUGCGGC-GCUGucucgGACCUgAUCCu -3'
miRNA:   3'- -GACGCUGuCGACcua--CUGGAgUAGGc -5'
29853 5' -54.9 NC_006273.1 + 163426 0.68 0.939907
Target:  5'- -cGCGugGGCUGGAaagccgugcugGGCCUCAaCgCGg -3'
miRNA:   3'- gaCGCugUCGACCUa----------CUGGAGUaG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.