Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29853 | 5' | -54.9 | NC_006273.1 | + | 101367 | 0.66 | 0.966743 |
Target: 5'- -gGCGGCGGCc--GUGcgcaucgccuGCCUCAUCCGa -3' miRNA: 3'- gaCGCUGUCGaccUAC----------UGGAGUAGGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 44648 | 0.66 | 0.969441 |
Target: 5'- -gGCGGCAGCUGG-UGgcguucuGCCUggagaaggugugCGUCCGc -3' miRNA: 3'- gaCGCUGUCGACCuAC-------UGGA------------GUAGGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 206002 | 0.66 | 0.977537 |
Target: 5'- cCUGCGACGuGC-GcGAcGACCgcuaCAUCCGg -3' miRNA: 3'- -GACGCUGU-CGaC-CUaCUGGa---GUAGGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 68424 | 0.66 | 0.975121 |
Target: 5'- -aGCGGCGGaCUGGAcgUGACCacccCCGa -3' miRNA: 3'- gaCGCUGUC-GACCU--ACUGGaguaGGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 21376 | 0.66 | 0.972521 |
Target: 5'- -gGCGACcGuCUGGAggUGGCCUgCAUCUu -3' miRNA: 3'- gaCGCUGuC-GACCU--ACUGGA-GUAGGc -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 125386 | 0.66 | 0.966743 |
Target: 5'- uUGCuGCAGCgGGAUGAUUUCG-CCu -3' miRNA: 3'- gACGcUGUCGaCCUACUGGAGUaGGc -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 58474 | 0.66 | 0.975121 |
Target: 5'- gUGUGAUgaAGCUGGAgagcUGGgCUCAcgucuUCCGg -3' miRNA: 3'- gACGCUG--UCGACCU----ACUgGAGU-----AGGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 148678 | 0.66 | 0.975121 |
Target: 5'- uCUGCGcgcaGCuGCUGGAgcuCCUCGUCg- -3' miRNA: 3'- -GACGC----UGuCGACCUacuGGAGUAGgc -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 193086 | 0.66 | 0.972521 |
Target: 5'- gCUG-GACGGCUGGAgcugGAUCgccaGUCCc -3' miRNA: 3'- -GACgCUGUCGACCUa---CUGGag--UAGGc -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 44265 | 0.67 | 0.944403 |
Target: 5'- uUGCGAUgagaGGgaGGAUGGCC--GUCCGu -3' miRNA: 3'- gACGCUG----UCgaCCUACUGGagUAGGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 135199 | 0.67 | 0.944403 |
Target: 5'- gCUGCGGC-GCUGucucgGACCUgAUCCu -3' miRNA: 3'- -GACGCUGuCGACcua--CUGGAgUAGGc -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 6497 | 0.67 | 0.948673 |
Target: 5'- gCUGCucGCAGUUGGGcu-CCUCGUCCu -3' miRNA: 3'- -GACGc-UGUCGACCUacuGGAGUAGGc -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 164628 | 0.67 | 0.944403 |
Target: 5'- -aGCGGgaAGgUGGGgaaGGCCUCGUCCa -3' miRNA: 3'- gaCGCUg-UCgACCUa--CUGGAGUAGGc -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 182148 | 0.67 | 0.963553 |
Target: 5'- -cGCGugAGUUGGGUGguucACCgUCAggugcUCCGa -3' miRNA: 3'- gaCGCugUCGACCUAC----UGG-AGU-----AGGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 162821 | 0.67 | 0.956546 |
Target: 5'- -cGCcGCAGCUGcGG-GGCCUCAUCg- -3' miRNA: 3'- gaCGcUGUCGAC-CUaCUGGAGUAGgc -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 148654 | 0.67 | 0.963553 |
Target: 5'- -cGCGGCGGCUGaGGUGcUCUCGUggugcggccugcCCGa -3' miRNA: 3'- gaCGCUGUCGAC-CUACuGGAGUA------------GGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 37300 | 0.67 | 0.960156 |
Target: 5'- uUGCGACGGCcGGAcauGCCggcaGUCCGc -3' miRNA: 3'- gACGCUGUCGaCCUac-UGGag--UAGGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 185853 | 0.67 | 0.956546 |
Target: 5'- -gGaCGACGGUa-GAUGACCUCGUCUu -3' miRNA: 3'- gaC-GCUGUCGacCUACUGGAGUAGGc -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 22362 | 0.67 | 0.952719 |
Target: 5'- gUGUGGCAGCUGGcuUGuacCCUCAcggUCUGc -3' miRNA: 3'- gACGCUGUCGACCu-ACu--GGAGU---AGGC- -5' |
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29853 | 5' | -54.9 | NC_006273.1 | + | 81708 | 0.68 | 0.919635 |
Target: 5'- uCUGCaGGC-GCUGGAUGGuggucuCCUCGUgCGg -3' miRNA: 3'- -GACG-CUGuCGACCUACU------GGAGUAgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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