miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 3' -53.9 NC_006273.1 + 46084 0.66 0.987083
Target:  5'- cGCAGGUgccGCGGUGuacGUCGCUcuacaUAGGa -3'
miRNA:   3'- -CGUCCAau-CGCCGCu--CAGUGG-----AUCUg -5'
29855 3' -53.9 NC_006273.1 + 7691 0.66 0.987083
Target:  5'- gGUAuGGgcGGCGGCGgcAGUgGCCgcGGCa -3'
miRNA:   3'- -CGU-CCaaUCGCCGC--UCAgUGGauCUG- -5'
29855 3' -53.9 NC_006273.1 + 201149 0.66 0.987083
Target:  5'- uGCGGaUUAGUGGuCGuGUCGCgacaUGGACg -3'
miRNA:   3'- -CGUCcAAUCGCC-GCuCAGUGg---AUCUG- -5'
29855 3' -53.9 NC_006273.1 + 233059 0.66 0.986928
Target:  5'- aGCAGcgUGGCGGCGAaagacgcGaUC-CCUGGGCu -3'
miRNA:   3'- -CGUCcaAUCGCCGCU-------C-AGuGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 1956 0.66 0.985463
Target:  5'- gGCuGGGUUGcGCGGCGGG--GCCggcgacggGGACg -3'
miRNA:   3'- -CG-UCCAAU-CGCCGCUCagUGGa-------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 196848 0.66 0.985463
Target:  5'- gGCuGGGUUGcGCGGCGGG--GCCggcgacggGGACg -3'
miRNA:   3'- -CG-UCCAAU-CGCCGCUCagUGGa-------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 8267 0.66 0.985463
Target:  5'- gGUAGGgcAGCGGCGcauacccacGcCGCCgUGGGCg -3'
miRNA:   3'- -CGUCCaaUCGCCGCu--------CaGUGG-AUCUG- -5'
29855 3' -53.9 NC_006273.1 + 179991 0.66 0.985463
Target:  5'- uGCGGGccgUGcCGGUgGAGUCgcagcagcGCCUGGACa -3'
miRNA:   3'- -CGUCCa--AUcGCCG-CUCAG--------UGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 132712 0.66 0.983693
Target:  5'- cGCGacGGUgaugcgAGUGGUGAGagCGCCggggAGACg -3'
miRNA:   3'- -CGU--CCAa-----UCGCCGCUCa-GUGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 187337 0.66 0.982555
Target:  5'- cGUcGGUcAGCGGCGccGUCACCgccauguccggcggAGGCa -3'
miRNA:   3'- -CGuCCAaUCGCCGCu-CAGUGGa-------------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 122238 0.66 0.981764
Target:  5'- cCGGGUgaUAGUGGCGAc-CACCgcuuagGGGCa -3'
miRNA:   3'- cGUCCA--AUCGCCGCUcaGUGGa-----UCUG- -5'
29855 3' -53.9 NC_006273.1 + 145670 0.66 0.981764
Target:  5'- -uGGGgc-GCGGCG-GUCGCaugCUGGGCg -3'
miRNA:   3'- cgUCCaauCGCCGCuCAGUG---GAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 106230 0.66 0.981764
Target:  5'- cGCGGGUggccAGCGGCGccGGUuUGCCUaccagucgucAGACc -3'
miRNA:   3'- -CGUCCAa---UCGCCGC--UCA-GUGGA----------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 134853 0.66 0.981764
Target:  5'- aCAGGUgAGCcaGGUGAGcCGCCaggugAGGCg -3'
miRNA:   3'- cGUCCAaUCG--CCGCUCaGUGGa----UCUG- -5'
29855 3' -53.9 NC_006273.1 + 40681 0.66 0.981764
Target:  5'- aGCAuGGacAGCGGCGAuGUgGCaggGGACa -3'
miRNA:   3'- -CGU-CCaaUCGCCGCU-CAgUGga-UCUG- -5'
29855 3' -53.9 NC_006273.1 + 140780 0.66 0.981764
Target:  5'- gGCGGGUggaccgggaAGcCGGCGgaGGUCGCCgGGAg -3'
miRNA:   3'- -CGUCCAa--------UC-GCCGC--UCAGUGGaUCUg -5'
29855 3' -53.9 NC_006273.1 + 194870 0.66 0.979669
Target:  5'- aGCGG--UAGCGcGcCGGGUCGCCUGuccGGCa -3'
miRNA:   3'- -CGUCcaAUCGC-C-GCUCAGUGGAU---CUG- -5'
29855 3' -53.9 NC_006273.1 + 140131 0.66 0.979669
Target:  5'- cGCGGGggaaaagaacGGCGGUGGGUCucgggccaaacGCCgucgUAGACg -3'
miRNA:   3'- -CGUCCaa--------UCGCCGCUCAG-----------UGG----AUCUG- -5'
29855 3' -53.9 NC_006273.1 + 145770 0.67 0.975952
Target:  5'- uGCGGGggaaacgacaguagUAGCGGC-AGcCACCgcgAGGCc -3'
miRNA:   3'- -CGUCCa-------------AUCGCCGcUCaGUGGa--UCUG- -5'
29855 3' -53.9 NC_006273.1 + 102167 0.67 0.97495
Target:  5'- aCAGGUgauaGGCGAG-CACCUcggugAGACc -3'
miRNA:   3'- cGUCCAaucgCCGCUCaGUGGA-----UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.