Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29855 | 3' | -53.9 | NC_006273.1 | + | 140131 | 0.66 | 0.979669 |
Target: 5'- cGCGGGggaaaagaacGGCGGUGGGUCucgggccaaacGCCgucgUAGACg -3' miRNA: 3'- -CGUCCaa--------UCGCCGCUCAG-----------UGG----AUCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 106230 | 0.66 | 0.981764 |
Target: 5'- cGCGGGUggccAGCGGCGccGGUuUGCCUaccagucgucAGACc -3' miRNA: 3'- -CGUCCAa---UCGCCGC--UCA-GUGGA----------UCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 122238 | 0.66 | 0.981764 |
Target: 5'- cCGGGUgaUAGUGGCGAc-CACCgcuuagGGGCa -3' miRNA: 3'- cGUCCA--AUCGCCGCUcaGUGGa-----UCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 140780 | 0.66 | 0.981764 |
Target: 5'- gGCGGGUggaccgggaAGcCGGCGgaGGUCGCCgGGAg -3' miRNA: 3'- -CGUCCAa--------UC-GCCGC--UCAGUGGaUCUg -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 145670 | 0.66 | 0.981764 |
Target: 5'- -uGGGgc-GCGGCG-GUCGCaugCUGGGCg -3' miRNA: 3'- cgUCCaauCGCCGCuCAGUG---GAUCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 8267 | 0.66 | 0.985463 |
Target: 5'- gGUAGGgcAGCGGCGcauacccacGcCGCCgUGGGCg -3' miRNA: 3'- -CGUCCaaUCGCCGCu--------CaGUGG-AUCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 1956 | 0.66 | 0.985463 |
Target: 5'- gGCuGGGUUGcGCGGCGGG--GCCggcgacggGGACg -3' miRNA: 3'- -CG-UCCAAU-CGCCGCUCagUGGa-------UCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 179991 | 0.66 | 0.985463 |
Target: 5'- uGCGGGccgUGcCGGUgGAGUCgcagcagcGCCUGGACa -3' miRNA: 3'- -CGUCCa--AUcGCCG-CUCAG--------UGGAUCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 46084 | 0.66 | 0.987083 |
Target: 5'- cGCAGGUgccGCGGUGuacGUCGCUcuacaUAGGa -3' miRNA: 3'- -CGUCCAau-CGCCGCu--CAGUGG-----AUCUg -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 194870 | 0.66 | 0.979669 |
Target: 5'- aGCGG--UAGCGcGcCGGGUCGCCUGuccGGCa -3' miRNA: 3'- -CGUCcaAUCGC-C-GCUCAGUGGAU---CUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 233059 | 0.66 | 0.986928 |
Target: 5'- aGCAGcgUGGCGGCGAaagacgcGaUC-CCUGGGCu -3' miRNA: 3'- -CGUCcaAUCGCCGCU-------C-AGuGGAUCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 196848 | 0.66 | 0.985463 |
Target: 5'- gGCuGGGUUGcGCGGCGGG--GCCggcgacggGGACg -3' miRNA: 3'- -CG-UCCAAU-CGCCGCUCagUGGa-------UCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 132712 | 0.66 | 0.983693 |
Target: 5'- cGCGacGGUgaugcgAGUGGUGAGagCGCCggggAGACg -3' miRNA: 3'- -CGU--CCAa-----UCGCCGCUCa-GUGGa---UCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 40681 | 0.66 | 0.981764 |
Target: 5'- aGCAuGGacAGCGGCGAuGUgGCaggGGACa -3' miRNA: 3'- -CGU-CCaaUCGCCGCU-CAgUGga-UCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 201149 | 0.66 | 0.987083 |
Target: 5'- uGCGGaUUAGUGGuCGuGUCGCgacaUGGACg -3' miRNA: 3'- -CGUCcAAUCGCC-GCuCAGUGg---AUCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 134853 | 0.66 | 0.981764 |
Target: 5'- aCAGGUgAGCcaGGUGAGcCGCCaggugAGGCg -3' miRNA: 3'- cGUCCAaUCG--CCGCUCaGUGGa----UCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 7691 | 0.66 | 0.987083 |
Target: 5'- gGUAuGGgcGGCGGCGgcAGUgGCCgcGGCa -3' miRNA: 3'- -CGU-CCaaUCGCCGC--UCAgUGGauCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 187337 | 0.66 | 0.982555 |
Target: 5'- cGUcGGUcAGCGGCGccGUCACCgccauguccggcggAGGCa -3' miRNA: 3'- -CGuCCAaUCGCCGCu-CAGUGGa-------------UCUG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 175044 | 0.67 | 0.969479 |
Target: 5'- aGCGGGUuuuacgaguggUGGCGGCGucGUCAgUUGG-Cg -3' miRNA: 3'- -CGUCCA-----------AUCGCCGCu-CAGUgGAUCuG- -5' |
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29855 | 3' | -53.9 | NC_006273.1 | + | 7952 | 0.67 | 0.963204 |
Target: 5'- aGguGGUcagUGGCGGCGAcaagGcCGCCUGaGCg -3' miRNA: 3'- -CguCCA---AUCGCCGCU----CaGUGGAUcUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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