miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 3' -53.9 NC_006273.1 + 110076 1.13 0.003874
Target:  5'- cGCAGGUUAGCGGCGAGUCACCUAGACg -3'
miRNA:   3'- -CGUCCAAUCGCCGCUCAGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 187778 0.77 0.565462
Target:  5'- cGCAGG-UAGCGGCuGGGUUGCUcGGGCa -3'
miRNA:   3'- -CGUCCaAUCGCCG-CUCAGUGGaUCUG- -5'
29855 3' -53.9 NC_006273.1 + 80945 0.73 0.745433
Target:  5'- aCGGGcu-GCGGCGAGUCGCCcAG-Cg -3'
miRNA:   3'- cGUCCaauCGCCGCUCAGUGGaUCuG- -5'
29855 3' -53.9 NC_006273.1 + 156266 0.73 0.745433
Target:  5'- gGCGGGUggaGGC-GCGGGUCAUCUacggGGACa -3'
miRNA:   3'- -CGUCCAa--UCGcCGCUCAGUGGA----UCUG- -5'
29855 3' -53.9 NC_006273.1 + 113489 0.72 0.789281
Target:  5'- uGCuGGGUUcggaugccguagccGGCGGCGGGUUGCCcgggGGGCg -3'
miRNA:   3'- -CG-UCCAA--------------UCGCCGCUCAGUGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 110871 0.71 0.835017
Target:  5'- cGguGGcacAGUGGUGGGcuguUCACCUAGGCu -3'
miRNA:   3'- -CguCCaa-UCGCCGCUC----AGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 189663 0.71 0.866242
Target:  5'- uGCAGG-UAGUGGCGcaGGUguCCgaugAGACg -3'
miRNA:   3'- -CGUCCaAUCGCCGC--UCAguGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 203387 0.7 0.880641
Target:  5'- cGCAGGUgggUGGCGcGCGGGUCGCg----- -3'
miRNA:   3'- -CGUCCA---AUCGC-CGCUCAGUGgaucug -5'
29855 3' -53.9 NC_006273.1 + 188447 0.7 0.88616
Target:  5'- aGCAGGUUguaGGUGGUGAGgcgcggauagcgCGCCUcGGCc -3'
miRNA:   3'- -CGUCCAA---UCGCCGCUCa-----------GUGGAuCUG- -5'
29855 3' -53.9 NC_006273.1 + 59891 0.7 0.900607
Target:  5'- aGCAGGUcgcaacGCGGCGAGUgACgaaucAGACa -3'
miRNA:   3'- -CGUCCAau----CGCCGCUCAgUGga---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 70904 0.7 0.900607
Target:  5'- aCGGGUUucAGCGuccggccuCGGGUUGCCUGGACg -3'
miRNA:   3'- cGUCCAA--UCGCc-------GCUCAGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 36646 0.69 0.912785
Target:  5'- uGCGGGaacuggccUGGCGGCGGGUaGCCgacGACu -3'
miRNA:   3'- -CGUCCa-------AUCGCCGCUCAgUGGau-CUG- -5'
29855 3' -53.9 NC_006273.1 + 234487 0.69 0.912785
Target:  5'- gGCGGGggGcGCGGCGAcaugccGUUGCgCUGGGCc -3'
miRNA:   3'- -CGUCCaaU-CGCCGCU------CAGUG-GAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 212577 0.69 0.912785
Target:  5'- aGCAcGGccgaAGCGGCG-GUCACCaccaGGACg -3'
miRNA:   3'- -CGU-CCaa--UCGCCGCuCAGUGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 39594 0.69 0.912785
Target:  5'- gGCGGGggGcGCGGCGAcaugccGUUGCgCUGGGCc -3'
miRNA:   3'- -CGUCCaaU-CGCCGCU------CAGUG-GAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 82843 0.69 0.918527
Target:  5'- uGCAGG-UGGC--CGAG-CGCCUGGGCg -3'
miRNA:   3'- -CGUCCaAUCGccGCUCaGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 123509 0.69 0.918527
Target:  5'- uGCAGGcugugGGUGGCGuGcCACCgcacGGACu -3'
miRNA:   3'- -CGUCCaa---UCGCCGCuCaGUGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 187204 0.69 0.924035
Target:  5'- -gGGGUgcgGGUGGCGGgcugcGUCGCCUucgguGACg -3'
miRNA:   3'- cgUCCAa--UCGCCGCU-----CAGUGGAu----CUG- -5'
29855 3' -53.9 NC_006273.1 + 155774 0.69 0.924035
Target:  5'- uGCuGGUgccgGGUGGCGAGUaccCCgUGGACc -3'
miRNA:   3'- -CGuCCAa---UCGCCGCUCAgu-GG-AUCUG- -5'
29855 3' -53.9 NC_006273.1 + 162774 0.69 0.924035
Target:  5'- cGguGGUggUGGCGGCGGcagcggccgcauGUCGCugccgCUGGACa -3'
miRNA:   3'- -CguCCA--AUCGCCGCU------------CAGUG-----GAUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.