miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 3' -53.9 NC_006273.1 + 102167 0.67 0.97495
Target:  5'- aCAGGUgauaGGCGAG-CACCUcggugAGACc -3'
miRNA:   3'- cGUCCAaucgCCGCUCaGUGGA-----UCUG- -5'
29855 3' -53.9 NC_006273.1 + 161676 0.67 0.969479
Target:  5'- cGCGGGgucgUGGCGGCuGuGUCguugugagGCCUguaugGGACg -3'
miRNA:   3'- -CGUCCa---AUCGCCG-CuCAG--------UGGA-----UCUG- -5'
29855 3' -53.9 NC_006273.1 + 175044 0.67 0.969479
Target:  5'- aGCGGGUuuuacgaguggUGGCGGCGucGUCAgUUGG-Cg -3'
miRNA:   3'- -CGUCCA-----------AUCGCCGCu-CAGUgGAUCuG- -5'
29855 3' -53.9 NC_006273.1 + 146375 0.67 0.966445
Target:  5'- uGCGGG-UGGCGGCGGGguuaagCGuCCUcGAa -3'
miRNA:   3'- -CGUCCaAUCGCCGCUCa-----GU-GGAuCUg -5'
29855 3' -53.9 NC_006273.1 + 7952 0.67 0.963204
Target:  5'- aGguGGUcagUGGCGGCGAcaagGcCGCCUGaGCg -3'
miRNA:   3'- -CguCCA---AUCGCCGCU----CaGUGGAUcUG- -5'
29855 3' -53.9 NC_006273.1 + 61378 0.67 0.963204
Target:  5'- -gAGGUgucGCGGCGAGUCGCa----- -3'
miRNA:   3'- cgUCCAau-CGCCGCUCAGUGgaucug -5'
29855 3' -53.9 NC_006273.1 + 164955 0.68 0.959751
Target:  5'- cUAGGUggcguagcAGCGGCGGGUCcaGCUgguGACg -3'
miRNA:   3'- cGUCCAa-------UCGCCGCUCAG--UGGau-CUG- -5'
29855 3' -53.9 NC_006273.1 + 157352 0.68 0.959751
Target:  5'- uGguGGUgagagUAGUGGUGGggcugcGUCGCCUGcGACg -3'
miRNA:   3'- -CguCCA-----AUCGCCGCU------CAGUGGAU-CUG- -5'
29855 3' -53.9 NC_006273.1 + 863 0.68 0.959394
Target:  5'- cGgGGGUUGGCGGCGGGUguuucuacgguguUugUgcGGCg -3'
miRNA:   3'- -CgUCCAAUCGCCGCUCA-------------GugGauCUG- -5'
29855 3' -53.9 NC_006273.1 + 40801 0.68 0.959394
Target:  5'- cGgGGGUUGGCGGCGGGUguuucuacgguguUugUgcGGCg -3'
miRNA:   3'- -CgUCCAAUCGCCGCUCA-------------GugGauCUG- -5'
29855 3' -53.9 NC_006273.1 + 158713 0.68 0.956081
Target:  5'- cGCGGGUcGGCGGCGAugauGUUcCCcgcgaaggGGACa -3'
miRNA:   3'- -CGUCCAaUCGCCGCU----CAGuGGa-------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 141884 0.68 0.956081
Target:  5'- -gAGGccGGCGGCGGcGUCACCacuuuGACc -3'
miRNA:   3'- cgUCCaaUCGCCGCU-CAGUGGau---CUG- -5'
29855 3' -53.9 NC_006273.1 + 54949 0.68 0.956081
Target:  5'- uCGGGUggUGGCGGCG-GUgGCgUGGAa -3'
miRNA:   3'- cGUCCA--AUCGCCGCuCAgUGgAUCUg -5'
29855 3' -53.9 NC_006273.1 + 90257 0.68 0.948074
Target:  5'- -aAGGUaucggcGGCGGCGAaUCGCCcGGGCu -3'
miRNA:   3'- cgUCCAa-----UCGCCGCUcAGUGGaUCUG- -5'
29855 3' -53.9 NC_006273.1 + 8353 0.68 0.948074
Target:  5'- cGCcGGUUGGUGGCuGGcggCAUCUAGAg -3'
miRNA:   3'- -CGuCCAAUCGCCGcUCa--GUGGAUCUg -5'
29855 3' -53.9 NC_006273.1 + 116406 0.68 0.948074
Target:  5'- cGCAGGcu-GUGGCGccGGUCuACgUGGGCg -3'
miRNA:   3'- -CGUCCaauCGCCGC--UCAG-UGgAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 198019 0.68 0.943731
Target:  5'- aCGGGgUGGa-GCGGGUCGCCgAGACu -3'
miRNA:   3'- cGUCCaAUCgcCGCUCAGUGGaUCUG- -5'
29855 3' -53.9 NC_006273.1 + 162397 0.69 0.939156
Target:  5'- gGCGGcGggAGCGGCG-GUCAgcacuCCUcGGACu -3'
miRNA:   3'- -CGUC-CaaUCGCCGCuCAGU-----GGA-UCUG- -5'
29855 3' -53.9 NC_006273.1 + 43431 0.69 0.93435
Target:  5'- aUAGGUcgUGGUGGUGAcaCACUUGGGCg -3'
miRNA:   3'- cGUCCA--AUCGCCGCUcaGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 67837 0.69 0.92931
Target:  5'- aCGGGUgauguagAGCGGCGcuGUCACCgcaccgAGAa -3'
miRNA:   3'- cGUCCAa------UCGCCGCu-CAGUGGa-----UCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.