miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 3' -53.9 NC_006273.1 + 863 0.68 0.959394
Target:  5'- cGgGGGUUGGCGGCGGGUguuucuacgguguUugUgcGGCg -3'
miRNA:   3'- -CgUCCAAUCGCCGCUCA-------------GugGauCUG- -5'
29855 3' -53.9 NC_006273.1 + 1956 0.66 0.985463
Target:  5'- gGCuGGGUUGcGCGGCGGG--GCCggcgacggGGACg -3'
miRNA:   3'- -CG-UCCAAU-CGCCGCUCagUGGa-------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 7691 0.66 0.987083
Target:  5'- gGUAuGGgcGGCGGCGgcAGUgGCCgcGGCa -3'
miRNA:   3'- -CGU-CCaaUCGCCGC--UCAgUGGauCUG- -5'
29855 3' -53.9 NC_006273.1 + 7952 0.67 0.963204
Target:  5'- aGguGGUcagUGGCGGCGAcaagGcCGCCUGaGCg -3'
miRNA:   3'- -CguCCA---AUCGCCGCU----CaGUGGAUcUG- -5'
29855 3' -53.9 NC_006273.1 + 8267 0.66 0.985463
Target:  5'- gGUAGGgcAGCGGCGcauacccacGcCGCCgUGGGCg -3'
miRNA:   3'- -CGUCCaaUCGCCGCu--------CaGUGG-AUCUG- -5'
29855 3' -53.9 NC_006273.1 + 8353 0.68 0.948074
Target:  5'- cGCcGGUUGGUGGCuGGcggCAUCUAGAg -3'
miRNA:   3'- -CGuCCAAUCGCCGcUCa--GUGGAUCUg -5'
29855 3' -53.9 NC_006273.1 + 36646 0.69 0.912785
Target:  5'- uGCGGGaacuggccUGGCGGCGGGUaGCCgacGACu -3'
miRNA:   3'- -CGUCCa-------AUCGCCGCUCAgUGGau-CUG- -5'
29855 3' -53.9 NC_006273.1 + 39594 0.69 0.912785
Target:  5'- gGCGGGggGcGCGGCGAcaugccGUUGCgCUGGGCc -3'
miRNA:   3'- -CGUCCaaU-CGCCGCU------CAGUG-GAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 40681 0.66 0.981764
Target:  5'- aGCAuGGacAGCGGCGAuGUgGCaggGGACa -3'
miRNA:   3'- -CGU-CCaaUCGCCGCU-CAgUGga-UCUG- -5'
29855 3' -53.9 NC_006273.1 + 40801 0.68 0.959394
Target:  5'- cGgGGGUUGGCGGCGGGUguuucuacgguguUugUgcGGCg -3'
miRNA:   3'- -CgUCCAAUCGCCGCUCA-------------GugGauCUG- -5'
29855 3' -53.9 NC_006273.1 + 43431 0.69 0.93435
Target:  5'- aUAGGUcgUGGUGGUGAcaCACUUGGGCg -3'
miRNA:   3'- cGUCCA--AUCGCCGCUcaGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 46084 0.66 0.987083
Target:  5'- cGCAGGUgccGCGGUGuacGUCGCUcuacaUAGGa -3'
miRNA:   3'- -CGUCCAau-CGCCGCu--CAGUGG-----AUCUg -5'
29855 3' -53.9 NC_006273.1 + 54949 0.68 0.956081
Target:  5'- uCGGGUggUGGCGGCG-GUgGCgUGGAa -3'
miRNA:   3'- cGUCCA--AUCGCCGCuCAgUGgAUCUg -5'
29855 3' -53.9 NC_006273.1 + 59891 0.7 0.900607
Target:  5'- aGCAGGUcgcaacGCGGCGAGUgACgaaucAGACa -3'
miRNA:   3'- -CGUCCAau----CGCCGCUCAgUGga---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 61378 0.67 0.963204
Target:  5'- -gAGGUgucGCGGCGAGUCGCa----- -3'
miRNA:   3'- cgUCCAau-CGCCGCUCAGUGgaucug -5'
29855 3' -53.9 NC_006273.1 + 67837 0.69 0.92931
Target:  5'- aCGGGUgauguagAGCGGCGcuGUCACCgcaccgAGAa -3'
miRNA:   3'- cGUCCAa------UCGCCGCu-CAGUGGa-----UCUg -5'
29855 3' -53.9 NC_006273.1 + 70904 0.7 0.900607
Target:  5'- aCGGGUUucAGCGuccggccuCGGGUUGCCUGGACg -3'
miRNA:   3'- cGUCCAA--UCGCc-------GCUCAGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 80945 0.73 0.745433
Target:  5'- aCGGGcu-GCGGCGAGUCGCCcAG-Cg -3'
miRNA:   3'- cGUCCaauCGCCGCUCAGUGGaUCuG- -5'
29855 3' -53.9 NC_006273.1 + 82843 0.69 0.918527
Target:  5'- uGCAGG-UGGC--CGAG-CGCCUGGGCg -3'
miRNA:   3'- -CGUCCaAUCGccGCUCaGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 87700 0.69 0.928793
Target:  5'- cGguGGUgcAGCGGCGgcugagcGGUCAuCCUcGGACa -3'
miRNA:   3'- -CguCCAa-UCGCCGC-------UCAGU-GGA-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.