miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 3' -53.9 NC_006273.1 + 90257 0.68 0.948074
Target:  5'- -aAGGUaucggcGGCGGCGAaUCGCCcGGGCu -3'
miRNA:   3'- cgUCCAa-----UCGCCGCUcAGUGGaUCUG- -5'
29855 3' -53.9 NC_006273.1 + 102167 0.67 0.97495
Target:  5'- aCAGGUgauaGGCGAG-CACCUcggugAGACc -3'
miRNA:   3'- cGUCCAaucgCCGCUCaGUGGA-----UCUG- -5'
29855 3' -53.9 NC_006273.1 + 106230 0.66 0.981764
Target:  5'- cGCGGGUggccAGCGGCGccGGUuUGCCUaccagucgucAGACc -3'
miRNA:   3'- -CGUCCAa---UCGCCGC--UCA-GUGGA----------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 110076 1.13 0.003874
Target:  5'- cGCAGGUUAGCGGCGAGUCACCUAGACg -3'
miRNA:   3'- -CGUCCAAUCGCCGCUCAGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 110871 0.71 0.835017
Target:  5'- cGguGGcacAGUGGUGGGcuguUCACCUAGGCu -3'
miRNA:   3'- -CguCCaa-UCGCCGCUC----AGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 113489 0.72 0.789281
Target:  5'- uGCuGGGUUcggaugccguagccGGCGGCGGGUUGCCcgggGGGCg -3'
miRNA:   3'- -CG-UCCAA--------------UCGCCGCUCAGUGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 116406 0.68 0.948074
Target:  5'- cGCAGGcu-GUGGCGccGGUCuACgUGGGCg -3'
miRNA:   3'- -CGUCCaauCGCCGC--UCAG-UGgAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 122238 0.66 0.981764
Target:  5'- cCGGGUgaUAGUGGCGAc-CACCgcuuagGGGCa -3'
miRNA:   3'- cGUCCA--AUCGCCGCUcaGUGGa-----UCUG- -5'
29855 3' -53.9 NC_006273.1 + 123509 0.69 0.918527
Target:  5'- uGCAGGcugugGGUGGCGuGcCACCgcacGGACu -3'
miRNA:   3'- -CGUCCaa---UCGCCGCuCaGUGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 132712 0.66 0.983693
Target:  5'- cGCGacGGUgaugcgAGUGGUGAGagCGCCggggAGACg -3'
miRNA:   3'- -CGU--CCAa-----UCGCCGCUCa-GUGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 134853 0.66 0.981764
Target:  5'- aCAGGUgAGCcaGGUGAGcCGCCaggugAGGCg -3'
miRNA:   3'- cGUCCAaUCG--CCGCUCaGUGGa----UCUG- -5'
29855 3' -53.9 NC_006273.1 + 138373 0.69 0.92931
Target:  5'- cGUAGGUUcuaagaccGCGGCGcaGGUCACaCUGGGa -3'
miRNA:   3'- -CGUCCAAu-------CGCCGC--UCAGUG-GAUCUg -5'
29855 3' -53.9 NC_006273.1 + 140131 0.66 0.979669
Target:  5'- cGCGGGggaaaagaacGGCGGUGGGUCucgggccaaacGCCgucgUAGACg -3'
miRNA:   3'- -CGUCCaa--------UCGCCGCUCAG-----------UGG----AUCUG- -5'
29855 3' -53.9 NC_006273.1 + 140780 0.66 0.981764
Target:  5'- gGCGGGUggaccgggaAGcCGGCGgaGGUCGCCgGGAg -3'
miRNA:   3'- -CGUCCAa--------UC-GCCGC--UCAGUGGaUCUg -5'
29855 3' -53.9 NC_006273.1 + 141884 0.68 0.956081
Target:  5'- -gAGGccGGCGGCGGcGUCACCacuuuGACc -3'
miRNA:   3'- cgUCCaaUCGCCGCU-CAGUGGau---CUG- -5'
29855 3' -53.9 NC_006273.1 + 145670 0.66 0.981764
Target:  5'- -uGGGgc-GCGGCG-GUCGCaugCUGGGCg -3'
miRNA:   3'- cgUCCaauCGCCGCuCAGUG---GAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 145770 0.67 0.975952
Target:  5'- uGCGGGggaaacgacaguagUAGCGGC-AGcCACCgcgAGGCc -3'
miRNA:   3'- -CGUCCa-------------AUCGCCGcUCaGUGGa--UCUG- -5'
29855 3' -53.9 NC_006273.1 + 146375 0.67 0.966445
Target:  5'- uGCGGG-UGGCGGCGGGguuaagCGuCCUcGAa -3'
miRNA:   3'- -CGUCCaAUCGCCGCUCa-----GU-GGAuCUg -5'
29855 3' -53.9 NC_006273.1 + 155774 0.69 0.924035
Target:  5'- uGCuGGUgccgGGUGGCGAGUaccCCgUGGACc -3'
miRNA:   3'- -CGuCCAa---UCGCCGCUCAgu-GG-AUCUG- -5'
29855 3' -53.9 NC_006273.1 + 156266 0.73 0.745433
Target:  5'- gGCGGGUggaGGC-GCGGGUCAUCUacggGGACa -3'
miRNA:   3'- -CGUCCAa--UCGcCGCUCAGUGGA----UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.