miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 3' -53.9 NC_006273.1 + 234487 0.69 0.912785
Target:  5'- gGCGGGggGcGCGGCGAcaugccGUUGCgCUGGGCc -3'
miRNA:   3'- -CGUCCaaU-CGCCGCU------CAGUG-GAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 233059 0.66 0.986928
Target:  5'- aGCAGcgUGGCGGCGAaagacgcGaUC-CCUGGGCu -3'
miRNA:   3'- -CGUCcaAUCGCCGCU-------C-AGuGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 212577 0.69 0.912785
Target:  5'- aGCAcGGccgaAGCGGCG-GUCACCaccaGGACg -3'
miRNA:   3'- -CGU-CCaa--UCGCCGCuCAGUGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 203387 0.7 0.880641
Target:  5'- cGCAGGUgggUGGCGcGCGGGUCGCg----- -3'
miRNA:   3'- -CGUCCA---AUCGC-CGCUCAGUGgaucug -5'
29855 3' -53.9 NC_006273.1 + 201149 0.66 0.987083
Target:  5'- uGCGGaUUAGUGGuCGuGUCGCgacaUGGACg -3'
miRNA:   3'- -CGUCcAAUCGCC-GCuCAGUGg---AUCUG- -5'
29855 3' -53.9 NC_006273.1 + 198019 0.68 0.943731
Target:  5'- aCGGGgUGGa-GCGGGUCGCCgAGACu -3'
miRNA:   3'- cGUCCaAUCgcCGCUCAGUGGaUCUG- -5'
29855 3' -53.9 NC_006273.1 + 196848 0.66 0.985463
Target:  5'- gGCuGGGUUGcGCGGCGGG--GCCggcgacggGGACg -3'
miRNA:   3'- -CG-UCCAAU-CGCCGCUCagUGGa-------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 194870 0.66 0.979669
Target:  5'- aGCGG--UAGCGcGcCGGGUCGCCUGuccGGCa -3'
miRNA:   3'- -CGUCcaAUCGC-C-GCUCAGUGGAU---CUG- -5'
29855 3' -53.9 NC_006273.1 + 189663 0.71 0.866242
Target:  5'- uGCAGG-UAGUGGCGcaGGUguCCgaugAGACg -3'
miRNA:   3'- -CGUCCaAUCGCCGC--UCAguGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 188447 0.7 0.88616
Target:  5'- aGCAGGUUguaGGUGGUGAGgcgcggauagcgCGCCUcGGCc -3'
miRNA:   3'- -CGUCCAA---UCGCCGCUCa-----------GUGGAuCUG- -5'
29855 3' -53.9 NC_006273.1 + 187778 0.77 0.565462
Target:  5'- cGCAGG-UAGCGGCuGGGUUGCUcGGGCa -3'
miRNA:   3'- -CGUCCaAUCGCCG-CUCAGUGGaUCUG- -5'
29855 3' -53.9 NC_006273.1 + 187337 0.66 0.982555
Target:  5'- cGUcGGUcAGCGGCGccGUCACCgccauguccggcggAGGCa -3'
miRNA:   3'- -CGuCCAaUCGCCGCu-CAGUGGa-------------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 187204 0.69 0.924035
Target:  5'- -gGGGUgcgGGUGGCGGgcugcGUCGCCUucgguGACg -3'
miRNA:   3'- cgUCCAa--UCGCCGCU-----CAGUGGAu----CUG- -5'
29855 3' -53.9 NC_006273.1 + 179991 0.66 0.985463
Target:  5'- uGCGGGccgUGcCGGUgGAGUCgcagcagcGCCUGGACa -3'
miRNA:   3'- -CGUCCa--AUcGCCG-CUCAG--------UGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 179916 0.67 0.97495
Target:  5'- cGCGGGUUAggaaauGCGGCGugccGGcCACCgcccGACu -3'
miRNA:   3'- -CGUCCAAU------CGCCGC----UCaGUGGau--CUG- -5'
29855 3' -53.9 NC_006273.1 + 175044 0.67 0.969479
Target:  5'- aGCGGGUuuuacgaguggUGGCGGCGucGUCAgUUGG-Cg -3'
miRNA:   3'- -CGUCCA-----------AUCGCCGCu-CAGUgGAUCuG- -5'
29855 3' -53.9 NC_006273.1 + 164955 0.68 0.959751
Target:  5'- cUAGGUggcguagcAGCGGCGGGUCcaGCUgguGACg -3'
miRNA:   3'- cGUCCAa-------UCGCCGCUCAG--UGGau-CUG- -5'
29855 3' -53.9 NC_006273.1 + 162774 0.69 0.924035
Target:  5'- cGguGGUggUGGCGGCGGcagcggccgcauGUCGCugccgCUGGACa -3'
miRNA:   3'- -CguCCA--AUCGCCGCU------------CAGUG-----GAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 162397 0.69 0.939156
Target:  5'- gGCGGcGggAGCGGCG-GUCAgcacuCCUcGGACu -3'
miRNA:   3'- -CGUC-CaaUCGCCGCuCAGU-----GGA-UCUG- -5'
29855 3' -53.9 NC_006273.1 + 161676 0.67 0.969479
Target:  5'- cGCGGGgucgUGGCGGCuGuGUCguugugagGCCUguaugGGACg -3'
miRNA:   3'- -CGUCCa---AUCGCCG-CuCAG--------UGGA-----UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.