miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 3' -53.9 NC_006273.1 + 145770 0.67 0.975952
Target:  5'- uGCGGGggaaacgacaguagUAGCGGC-AGcCACCgcgAGGCc -3'
miRNA:   3'- -CGUCCa-------------AUCGCCGcUCaGUGGa--UCUG- -5'
29855 3' -53.9 NC_006273.1 + 141884 0.68 0.956081
Target:  5'- -gAGGccGGCGGCGGcGUCACCacuuuGACc -3'
miRNA:   3'- cgUCCaaUCGCCGCU-CAGUGGau---CUG- -5'
29855 3' -53.9 NC_006273.1 + 158713 0.68 0.956081
Target:  5'- cGCGGGUcGGCGGCGAugauGUUcCCcgcgaaggGGACa -3'
miRNA:   3'- -CGUCCAaUCGCCGCU----CAGuGGa-------UCUG- -5'
29855 3' -53.9 NC_006273.1 + 863 0.68 0.959394
Target:  5'- cGgGGGUUGGCGGCGGGUguuucuacgguguUugUgcGGCg -3'
miRNA:   3'- -CgUCCAAUCGCCGCUCA-------------GugGauCUG- -5'
29855 3' -53.9 NC_006273.1 + 164955 0.68 0.959751
Target:  5'- cUAGGUggcguagcAGCGGCGGGUCcaGCUgguGACg -3'
miRNA:   3'- cGUCCAa-------UCGCCGCUCAG--UGGau-CUG- -5'
29855 3' -53.9 NC_006273.1 + 61378 0.67 0.963204
Target:  5'- -gAGGUgucGCGGCGAGUCGCa----- -3'
miRNA:   3'- cgUCCAau-CGCCGCUCAGUGgaucug -5'
29855 3' -53.9 NC_006273.1 + 146375 0.67 0.966445
Target:  5'- uGCGGG-UGGCGGCGGGguuaagCGuCCUcGAa -3'
miRNA:   3'- -CGUCCaAUCGCCGCUCa-----GU-GGAuCUg -5'
29855 3' -53.9 NC_006273.1 + 102167 0.67 0.97495
Target:  5'- aCAGGUgauaGGCGAG-CACCUcggugAGACc -3'
miRNA:   3'- cGUCCAaucgCCGCUCaGUGGA-----UCUG- -5'
29855 3' -53.9 NC_006273.1 + 179916 0.67 0.97495
Target:  5'- cGCGGGUUAggaaauGCGGCGugccGGcCACCgcccGACu -3'
miRNA:   3'- -CGUCCAAU------CGCCGC----UCaGUGGau--CUG- -5'
29855 3' -53.9 NC_006273.1 + 54949 0.68 0.956081
Target:  5'- uCGGGUggUGGCGGCG-GUgGCgUGGAa -3'
miRNA:   3'- cGUCCA--AUCGCCGCuCAgUGgAUCUg -5'
29855 3' -53.9 NC_006273.1 + 8353 0.68 0.948074
Target:  5'- cGCcGGUUGGUGGCuGGcggCAUCUAGAg -3'
miRNA:   3'- -CGuCCAAUCGCCGcUCa--GUGGAUCUg -5'
29855 3' -53.9 NC_006273.1 + 116406 0.68 0.948074
Target:  5'- cGCAGGcu-GUGGCGccGGUCuACgUGGGCg -3'
miRNA:   3'- -CGUCCaauCGCCGC--UCAG-UGgAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 110871 0.71 0.835017
Target:  5'- cGguGGcacAGUGGUGGGcuguUCACCUAGGCu -3'
miRNA:   3'- -CguCCaa-UCGCCGCUC----AGUGGAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 59891 0.7 0.900607
Target:  5'- aGCAGGUcgcaacGCGGCGAGUgACgaaucAGACa -3'
miRNA:   3'- -CGUCCAau----CGCCGCUCAgUGga---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 212577 0.69 0.912785
Target:  5'- aGCAcGGccgaAGCGGCG-GUCACCaccaGGACg -3'
miRNA:   3'- -CGU-CCaa--UCGCCGCuCAGUGGa---UCUG- -5'
29855 3' -53.9 NC_006273.1 + 234487 0.69 0.912785
Target:  5'- gGCGGGggGcGCGGCGAcaugccGUUGCgCUGGGCc -3'
miRNA:   3'- -CGUCCaaU-CGCCGCU------CAGUG-GAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 162774 0.69 0.924035
Target:  5'- cGguGGUggUGGCGGCGGcagcggccgcauGUCGCugccgCUGGACa -3'
miRNA:   3'- -CguCCA--AUCGCCGCU------------CAGUG-----GAUCUG- -5'
29855 3' -53.9 NC_006273.1 + 67837 0.69 0.92931
Target:  5'- aCGGGUgauguagAGCGGCGcuGUCACCgcaccgAGAa -3'
miRNA:   3'- cGUCCAa------UCGCCGCu-CAGUGGa-----UCUg -5'
29855 3' -53.9 NC_006273.1 + 138373 0.69 0.92931
Target:  5'- cGUAGGUUcuaagaccGCGGCGcaGGUCACaCUGGGa -3'
miRNA:   3'- -CGUCCAAu-------CGCCGC--UCAGUG-GAUCUg -5'
29855 3' -53.9 NC_006273.1 + 162397 0.69 0.939156
Target:  5'- gGCGGcGggAGCGGCG-GUCAgcacuCCUcGGACu -3'
miRNA:   3'- -CGUC-CaaUCGCCGCuCAGU-----GGA-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.