miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 5' -63.6 NC_006273.1 + 13593 0.66 0.724002
Target:  5'- cGGCCCGGGC-CGCCGUGCUgGa--- -3'
miRNA:   3'- cCCGGGCCUGcGCGGUGCGAgCgaga -5'
29855 5' -63.6 NC_006273.1 + 198652 0.66 0.724002
Target:  5'- cGGGCCgagcugugccgcCGcucGCGCGCCucCGCUCGCg-- -3'
miRNA:   3'- -CCCGG------------GCc--UGCGCGGu-GCGAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 2369 0.66 0.724002
Target:  5'- cGGGCgugCUGGGCGCGCUgGCGCUggggCGCg-- -3'
miRNA:   3'- -CCCG---GGCCUGCGCGG-UGCGA----GCGaga -5'
29855 5' -63.6 NC_006273.1 + 222831 0.66 0.724002
Target:  5'- uGGCCgcagagcagcaaCGGACGCGUCAU-CUCGC-CUg -3'
miRNA:   3'- cCCGG------------GCCUGCGCGGUGcGAGCGaGA- -5'
29855 5' -63.6 NC_006273.1 + 131266 0.66 0.724002
Target:  5'- cGGGUCUcGGCGUGCgCGCGC-CGCg-- -3'
miRNA:   3'- -CCCGGGcCUGCGCG-GUGCGaGCGaga -5'
29855 5' -63.6 NC_006273.1 + 197262 0.66 0.724002
Target:  5'- cGGGCgugCUGGGCGCGCUgGCGCUggggCGCg-- -3'
miRNA:   3'- -CCCG---GGCCUGCGCGG-UGCGA----GCGaga -5'
29855 5' -63.6 NC_006273.1 + 68049 0.66 0.723093
Target:  5'- uGGGCUCGGccaGCGCCGCcguggccGC-CGCUg- -3'
miRNA:   3'- -CCCGGGCCug-CGCGGUG-------CGaGCGAga -5'
29855 5' -63.6 NC_006273.1 + 30180 0.66 0.714882
Target:  5'- gGGGCCCGu-CGCacaCCACGCUcCGUcuUCUu -3'
miRNA:   3'- -CCCGGGCcuGCGc--GGUGCGA-GCG--AGA- -5'
29855 5' -63.6 NC_006273.1 + 232850 0.66 0.714882
Target:  5'- cGGCCCGGACGUagcaaaaaaGCUaacugcccguGCGgCUCGCg-- -3'
miRNA:   3'- cCCGGGCCUGCG---------CGG----------UGC-GAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 98029 0.66 0.714882
Target:  5'- -aGCCCGGugcgaggacaACGCGCCGCGCgcacuuccaCGCcCa -3'
miRNA:   3'- ccCGGGCC----------UGCGCGGUGCGa--------GCGaGa -5'
29855 5' -63.6 NC_006273.1 + 81024 0.66 0.714882
Target:  5'- cGGGCagaucaaaGaGACG-GUgGCGCUCGCUCa -3'
miRNA:   3'- -CCCGgg------C-CUGCgCGgUGCGAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 144060 0.66 0.711217
Target:  5'- cGGGCCCacgguacgccaguaGccgaggacuuuauGACGCgcgugGCCGCGCUgGCUCg -3'
miRNA:   3'- -CCCGGG--------------C-------------CUGCG-----CGGUGCGAgCGAGa -5'
29855 5' -63.6 NC_006273.1 + 148536 0.66 0.704781
Target:  5'- uGGGgCCGGACcucuuugagacggGCGCCGC-C-CGUUCUu -3'
miRNA:   3'- -CCCgGGCCUG-------------CGCGGUGcGaGCGAGA- -5'
29855 5' -63.6 NC_006273.1 + 40499 0.66 0.702937
Target:  5'- cGGCCCGGcUGCuGCCggacaggcgacccgGCGCgcuacCGCUCa -3'
miRNA:   3'- cCCGGGCCuGCG-CGG--------------UGCGa----GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 73877 0.66 0.702937
Target:  5'- cGGCCgacaugCGGGCGCGCCACagagauggaccacuGC-CGCUg- -3'
miRNA:   3'- cCCGG------GCCUGCGCGGUG--------------CGaGCGAga -5'
29855 5' -63.6 NC_006273.1 + 174307 0.66 0.696469
Target:  5'- aGGGCUCGGAUGUggaaGCUcCGC-CGCUa- -3'
miRNA:   3'- -CCCGGGCCUGCG----CGGuGCGaGCGAga -5'
29855 5' -63.6 NC_006273.1 + 144466 0.66 0.696469
Target:  5'- cGGGCUC--GCGCGCCGgCGuCUCGC-Cg -3'
miRNA:   3'- -CCCGGGccUGCGCGGU-GC-GAGCGaGa -5'
29855 5' -63.6 NC_006273.1 + 223125 0.66 0.696469
Target:  5'- aGGaGCaCCaGACGgGCCugGCUaggugGCUCa -3'
miRNA:   3'- -CC-CG-GGcCUGCgCGGugCGAg----CGAGa -5'
29855 5' -63.6 NC_006273.1 + 185685 0.66 0.696469
Target:  5'- aGGGUCCGGGCuuuauGCGCUACcaaCUCaucguGCUCa -3'
miRNA:   3'- -CCCGGGCCUG-----CGCGGUGc--GAG-----CGAGa -5'
29855 5' -63.6 NC_006273.1 + 130799 0.66 0.696469
Target:  5'- uGGGCCagcugcauCGUGCCggcgcgacgaugACGCUCGUUCUg -3'
miRNA:   3'- -CCCGGgccu----GCGCGG------------UGCGAGCGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.