Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29855 | 5' | -63.6 | NC_006273.1 | + | 232850 | 0.66 | 0.714882 |
Target: 5'- cGGCCCGGACGUagcaaaaaaGCUaacugcccguGCGgCUCGCg-- -3' miRNA: 3'- cCCGGGCCUGCG---------CGG----------UGC-GAGCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 73877 | 0.66 | 0.702937 |
Target: 5'- cGGCCgacaugCGGGCGCGCCACagagauggaccacuGC-CGCUg- -3' miRNA: 3'- cCCGG------GCCUGCGCGGUG--------------CGaGCGAga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 148536 | 0.66 | 0.704781 |
Target: 5'- uGGGgCCGGACcucuuugagacggGCGCCGC-C-CGUUCUu -3' miRNA: 3'- -CCCgGGCCUG-------------CGCGGUGcGaGCGAGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 144060 | 0.66 | 0.711217 |
Target: 5'- cGGGCCCacgguacgccaguaGccgaggacuuuauGACGCgcgugGCCGCGCUgGCUCg -3' miRNA: 3'- -CCCGGG--------------C-------------CUGCG-----CGGUGCGAgCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 30180 | 0.66 | 0.714882 |
Target: 5'- gGGGCCCGu-CGCacaCCACGCUcCGUcuUCUu -3' miRNA: 3'- -CCCGGGCcuGCGc--GGUGCGA-GCG--AGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 197262 | 0.66 | 0.724002 |
Target: 5'- cGGGCgugCUGGGCGCGCUgGCGCUggggCGCg-- -3' miRNA: 3'- -CCCG---GGCCUGCGCGG-UGCGA----GCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 131266 | 0.66 | 0.724002 |
Target: 5'- cGGGUCUcGGCGUGCgCGCGC-CGCg-- -3' miRNA: 3'- -CCCGGGcCUGCGCG-GUGCGaGCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 222831 | 0.66 | 0.724002 |
Target: 5'- uGGCCgcagagcagcaaCGGACGCGUCAU-CUCGC-CUg -3' miRNA: 3'- cCCGG------------GCCUGCGCGGUGcGAGCGaGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 166650 | 0.66 | 0.668526 |
Target: 5'- cGGCgUGGACGCGCCgugGCagUCGcCUCUu -3' miRNA: 3'- cCCGgGCCUGCGCGGug-CG--AGC-GAGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 40499 | 0.66 | 0.702937 |
Target: 5'- cGGCCCGGcUGCuGCCggacaggcgacccgGCGCgcuacCGCUCa -3' miRNA: 3'- cCCGGGCCuGCG-CGG--------------UGCGa----GCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 174307 | 0.66 | 0.696469 |
Target: 5'- aGGGCUCGGAUGUggaaGCUcCGC-CGCUa- -3' miRNA: 3'- -CCCGGGCCUGCG----CGGuGCGaGCGAga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 144466 | 0.66 | 0.696469 |
Target: 5'- cGGGCUC--GCGCGCCGgCGuCUCGC-Cg -3' miRNA: 3'- -CCCGGGccUGCGCGGU-GC-GAGCGaGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 205157 | 0.66 | 0.668526 |
Target: 5'- cGGGCgCGGAaaguguccuCGCCACGCUgGC-Cg -3' miRNA: 3'- -CCCGgGCCUgc-------GCGGUGCGAgCGaGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 116825 | 0.66 | 0.677875 |
Target: 5'- cGGGCUCGGAaa--CCACGC-CGUUCa -3' miRNA: 3'- -CCCGGGCCUgcgcGGUGCGaGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 85826 | 0.66 | 0.668526 |
Target: 5'- cGGCCCGGcCGcCGCCAcCGUuauUC-CUCUg -3' miRNA: 3'- cCCGGGCCuGC-GCGGU-GCG---AGcGAGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 189054 | 0.66 | 0.677875 |
Target: 5'- gGGGCCCGGACcggcgGCGUagGCGgC-CGCUUc -3' miRNA: 3'- -CCCGGGCCUG-----CGCGg-UGC-GaGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 197124 | 0.66 | 0.683469 |
Target: 5'- cGGGUCCGGcggcgucggggacCGUGCCGCGCgccaUGCUg- -3' miRNA: 3'- -CCCGGGCCu------------GCGCGGUGCGa---GCGAga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 129980 | 0.66 | 0.687191 |
Target: 5'- uGGCCaCGcAUGUGCUACGCggaUUGCUCUc -3' miRNA: 3'- cCCGG-GCcUGCGCGGUGCG---AGCGAGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 196537 | 0.66 | 0.692763 |
Target: 5'- uGGGCgUGGgcaccccGCGCGCgACGCUgcugccucagccggCGCUCc -3' miRNA: 3'- -CCCGgGCC-------UGCGCGgUGCGA--------------GCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 223125 | 0.66 | 0.696469 |
Target: 5'- aGGaGCaCCaGACGgGCCugGCUaggugGCUCa -3' miRNA: 3'- -CC-CG-GGcCUGCgCGGugCGAg----CGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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