miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 5' -63.6 NC_006273.1 + 110110 1.09 0.00105
Target:  5'- cGGGCCCGGACGCGCCACGCUCGCUCUg -3'
miRNA:   3'- -CCCGGGCCUGCGCGGUGCGAGCGAGA- -5'
29855 5' -63.6 NC_006273.1 + 101208 0.77 0.176296
Target:  5'- gGGGCaccgaggCGGACGCgGCCACGCgUCGCUUg -3'
miRNA:   3'- -CCCGg------GCCUGCG-CGGUGCG-AGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 142371 0.77 0.188939
Target:  5'- cGGGCCCGGGcCGCGuuCCGCaGC-CGCUCa -3'
miRNA:   3'- -CCCGGGCCU-GCGC--GGUG-CGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 84106 0.75 0.257175
Target:  5'- cGGCCCaGGAacgcuugaaaggucCGCGCCGCGC-CGCUUg -3'
miRNA:   3'- cCCGGG-CCU--------------GCGCGGUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 94393 0.73 0.307613
Target:  5'- cGGGCaCCGGGCGCgGCC-CGCUCcggacCUCg -3'
miRNA:   3'- -CCCG-GGCCUGCG-CGGuGCGAGc----GAGa -5'
29855 5' -63.6 NC_006273.1 + 101573 0.73 0.334497
Target:  5'- cGGGCgCGG-CGU-UCGCGCUCGCUCa -3'
miRNA:   3'- -CCCGgGCCuGCGcGGUGCGAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 68549 0.71 0.393272
Target:  5'- -cGUCCGGugGUGCCGCGCUCuacUUCg -3'
miRNA:   3'- ccCGGGCCugCGCGGUGCGAGc--GAGa -5'
29855 5' -63.6 NC_006273.1 + 158751 0.71 0.393272
Target:  5'- cGGGUCgGGuCGCGCCagugcgccgucgACGC-CGCUCa -3'
miRNA:   3'- -CCCGGgCCuGCGCGG------------UGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 174113 0.71 0.408978
Target:  5'- cGGCCuCGGccgcGCGCGCCGCGCU-GCa-- -3'
miRNA:   3'- cCCGG-GCC----UGCGCGGUGCGAgCGaga -5'
29855 5' -63.6 NC_006273.1 + 147499 0.71 0.433255
Target:  5'- gGGGCCauGGCGauagcggcgGCC-CGCUCGCUCg -3'
miRNA:   3'- -CCCGGgcCUGCg--------CGGuGCGAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 111328 0.7 0.449057
Target:  5'- aGGCCUGGccgcauaGCGCgGCCGCGC-CGCUg- -3'
miRNA:   3'- cCCGGGCC-------UGCG-CGGUGCGaGCGAga -5'
29855 5' -63.6 NC_006273.1 + 143159 0.7 0.475503
Target:  5'- cGGGCaCGG-CGCGCCGCauccccaacuGCUCGCa-- -3'
miRNA:   3'- -CCCGgGCCuGCGCGGUG----------CGAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 142817 0.69 0.510728
Target:  5'- uGGGCaCGGGCGUGCacCGCGgUCuGCUCa -3'
miRNA:   3'- -CCCGgGCCUGCGCG--GUGCgAG-CGAGa -5'
29855 5' -63.6 NC_006273.1 + 227344 0.69 0.510728
Target:  5'- cGGCCgUGGagagGCGuCGCCGCGuCUCGUUCg -3'
miRNA:   3'- cCCGG-GCC----UGC-GCGGUGC-GAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 211886 0.69 0.510728
Target:  5'- uGGCaaCGG-CGUGCCGCGCUCGUgUCa -3'
miRNA:   3'- cCCGg-GCCuGCGCGGUGCGAGCG-AGa -5'
29855 5' -63.6 NC_006273.1 + 183092 0.69 0.519706
Target:  5'- uGGGCaaGGugGCGCUuCGCUaCGCg-- -3'
miRNA:   3'- -CCCGggCCugCGCGGuGCGA-GCGaga -5'
29855 5' -63.6 NC_006273.1 + 8825 0.69 0.546992
Target:  5'- cGGCCUGGG-GCGCgG-GCUCGUUCg -3'
miRNA:   3'- cCCGGGCCUgCGCGgUgCGAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 173954 0.68 0.556191
Target:  5'- aGGGCCUGGuagaguucgagGCGCaGCCgggcGCGCU-GCUCa -3'
miRNA:   3'- -CCCGGGCC-----------UGCG-CGG----UGCGAgCGAGa -5'
29855 5' -63.6 NC_006273.1 + 144893 0.68 0.556191
Target:  5'- aGGGCCaCGcucaaGCGCgCGCGCcCGCUCa -3'
miRNA:   3'- -CCCGG-GCcug--CGCG-GUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 137399 0.68 0.556191
Target:  5'- -cGCCgCGGACGCcuGCgACGUUgGCUCUc -3'
miRNA:   3'- ccCGG-GCCUGCG--CGgUGCGAgCGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.