miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 5' -63.6 NC_006273.1 + 93028 0.68 0.565434
Target:  5'- cGGCCCGGGCccgaUGCCACGg-CGCUg- -3'
miRNA:   3'- cCCGGGCCUGc---GCGGUGCgaGCGAga -5'
29855 5' -63.6 NC_006273.1 + 124437 0.68 0.574716
Target:  5'- cGGCCgcgCGGGCGUgcgcggcucGCCgACGCUgCGCUCg -3'
miRNA:   3'- cCCGG---GCCUGCG---------CGG-UGCGA-GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 33009 0.68 0.584033
Target:  5'- aGGGCagauccaGGugGCGaCCGCGCUgGCg-- -3'
miRNA:   3'- -CCCGgg-----CCugCGC-GGUGCGAgCGaga -5'
29855 5' -63.6 NC_006273.1 + 31489 0.68 0.60275
Target:  5'- cGGCCUGGGC-UGCUguuggguaACGCUgGCUCa -3'
miRNA:   3'- cCCGGGCCUGcGCGG--------UGCGAgCGAGa -5'
29855 5' -63.6 NC_006273.1 + 39147 0.68 0.60275
Target:  5'- aGGUCCGu-CGCGcCCACGC-CGUUCa -3'
miRNA:   3'- cCCGGGCcuGCGC-GGUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 217699 0.68 0.60275
Target:  5'- uGGCCCagggggugGGACGCGCCGC-CUacacaaagUGCUCc -3'
miRNA:   3'- cCCGGG--------CCUGCGCGGUGcGA--------GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 203994 0.68 0.60275
Target:  5'- cGGCgauUCGGGCGUGCCGCGaugccgcaGCUCUu -3'
miRNA:   3'- cCCG---GGCCUGCGCGGUGCgag-----CGAGA- -5'
29855 5' -63.6 NC_006273.1 + 198270 0.68 0.60275
Target:  5'- aGGGCCUGcGGCGUuacuuGCgGCGCUUcgaggGCUCg -3'
miRNA:   3'- -CCCGGGC-CUGCG-----CGgUGCGAG-----CGAGa -5'
29855 5' -63.6 NC_006273.1 + 234040 0.68 0.60275
Target:  5'- aGGUCCGu-CGCGcCCACGC-CGUUCa -3'
miRNA:   3'- cCCGGGCcuGCGC-GGUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 40928 0.67 0.612139
Target:  5'- -cGCUCGGGCggacgcgugcgGCGUCGCGaCUCGCUUg -3'
miRNA:   3'- ccCGGGCCUG-----------CGCGGUGC-GAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 128950 0.67 0.612139
Target:  5'- -uGCCUGGACGCGCaauuCGUUUGCa-- -3'
miRNA:   3'- ccCGGGCCUGCGCGgu--GCGAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 140989 0.67 0.62154
Target:  5'- aGGUCCGGAgCGgGCCGCGCcCGgUg- -3'
miRNA:   3'- cCCGGGCCU-GCgCGGUGCGaGCgAga -5'
29855 5' -63.6 NC_006273.1 + 139343 0.67 0.628126
Target:  5'- cGGuGCCCGcGACuCGCCccuccuccaagaugGCGC-CGCUCg -3'
miRNA:   3'- -CC-CGGGC-CUGcGCGG--------------UGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 196025 0.67 0.630949
Target:  5'- cGGCCCGGA-GCGCCuguUGCUguCUCa -3'
miRNA:   3'- cCCGGGCCUgCGCGGu--GCGAgcGAGa -5'
29855 5' -63.6 NC_006273.1 + 1132 0.67 0.630949
Target:  5'- cGGCCCGGA-GCGCCuguUGCUguCUCa -3'
miRNA:   3'- cCCGGGCCUgCGCGGu--GCGAgcGAGa -5'
29855 5' -63.6 NC_006273.1 + 201174 0.67 0.639417
Target:  5'- cGGGUugcccgucaaguaCCGGACGCaCCGCGC-CGC-Cg -3'
miRNA:   3'- -CCCG-------------GGCCUGCGcGGUGCGaGCGaGa -5'
29855 5' -63.6 NC_006273.1 + 43017 0.67 0.640358
Target:  5'- cGGGUaaguguagCCGcGACGCGCCACgGC-CGCg-- -3'
miRNA:   3'- -CCCG--------GGC-CUGCGCGGUG-CGaGCGaga -5'
29855 5' -63.6 NC_006273.1 + 98169 0.67 0.640358
Target:  5'- cGGUuuGGGCGCcgaGCGCUCGCgCUg -3'
miRNA:   3'- cCCGggCCUGCGcggUGCGAGCGaGA- -5'
29855 5' -63.6 NC_006273.1 + 134986 0.67 0.640358
Target:  5'- -aGCCCGGucaaaugaGCGCCugGCUaCGCg-- -3'
miRNA:   3'- ccCGGGCCug------CGCGGugCGA-GCGaga -5'
29855 5' -63.6 NC_006273.1 + 113613 0.67 0.648821
Target:  5'- cGGGCCgUGGuACGCGCgcgaccccgcgguCACGCUgucgcaGCUCUu -3'
miRNA:   3'- -CCCGG-GCC-UGCGCG-------------GUGCGAg-----CGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.