miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 5' -63.6 NC_006273.1 + 70096 0.66 0.69369
Target:  5'- -aGCUCGGACacaGCGCCGCGCUggaugacggugaugCGCggCUa -3'
miRNA:   3'- ccCGGGCCUG---CGCGGUGCGA--------------GCGa-GA- -5'
29855 5' -63.6 NC_006273.1 + 196537 0.66 0.692763
Target:  5'- uGGGCgUGGgcaccccGCGCGCgACGCUgcugccucagccggCGCUCc -3'
miRNA:   3'- -CCCGgGCC-------UGCGCGgUGCGA--------------GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 1644 0.66 0.692763
Target:  5'- uGGGCgUGGgcaccccGCGCGCgACGCUgcugccucagccggCGCUCc -3'
miRNA:   3'- -CCCGgGCC-------UGCGCGgUGCGA--------------GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 156878 0.66 0.687191
Target:  5'- cGGuGUCCGGGCgGCGCCGCaggGUUC-CUCc -3'
miRNA:   3'- -CC-CGGGCCUG-CGCGGUG---CGAGcGAGa -5'
29855 5' -63.6 NC_006273.1 + 15655 0.66 0.687191
Target:  5'- cGGGCCCGcGGCuGCacuGCCugGUgacgacgCGUUCg -3'
miRNA:   3'- -CCCGGGC-CUG-CG---CGGugCGa------GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 113140 0.66 0.687191
Target:  5'- cGGCCgcagaGGGCGCGCCGCuCagUCGC-CUa -3'
miRNA:   3'- cCCGGg----CCUGCGCGGUGcG--AGCGaGA- -5'
29855 5' -63.6 NC_006273.1 + 129980 0.66 0.687191
Target:  5'- uGGCCaCGcAUGUGCUACGCggaUUGCUCUc -3'
miRNA:   3'- cCCGG-GCcUGCGCGGUGCG---AGCGAGA- -5'
29855 5' -63.6 NC_006273.1 + 197124 0.66 0.683469
Target:  5'- cGGGUCCGGcggcgucggggacCGUGCCGCGCgccaUGCUg- -3'
miRNA:   3'- -CCCGGGCCu------------GCGCGGUGCGa---GCGAga -5'
29855 5' -63.6 NC_006273.1 + 2231 0.66 0.683469
Target:  5'- cGGGUCCGGcggcgucggggacCGUGCCGCGCgccaUGCUg- -3'
miRNA:   3'- -CCCGGGCCu------------GCGCGGUGCGa---GCGAga -5'
29855 5' -63.6 NC_006273.1 + 116825 0.66 0.677875
Target:  5'- cGGGCUCGGAaa--CCACGC-CGUUCa -3'
miRNA:   3'- -CCCGGGCCUgcgcGGUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 189504 0.66 0.677875
Target:  5'- cGGCCCGG-C-CGCCGCGCUgUGUg-- -3'
miRNA:   3'- cCCGGGCCuGcGCGGUGCGA-GCGaga -5'
29855 5' -63.6 NC_006273.1 + 131615 0.66 0.677875
Target:  5'- cGGCgCUGGcACGCG-CGCGgUUGCUCg -3'
miRNA:   3'- cCCG-GGCC-UGCGCgGUGCgAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 189054 0.66 0.677875
Target:  5'- gGGGCCCGGACcggcgGCGUagGCGgC-CGCUUc -3'
miRNA:   3'- -CCCGGGCCUG-----CGCGg-UGC-GaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 166650 0.66 0.668526
Target:  5'- cGGCgUGGACGCGCCgugGCagUCGcCUCUu -3'
miRNA:   3'- cCCGgGCCUGCGCGGug-CG--AGC-GAGA- -5'
29855 5' -63.6 NC_006273.1 + 85826 0.66 0.668526
Target:  5'- cGGCCCGGcCGcCGCCAcCGUuauUC-CUCUg -3'
miRNA:   3'- cCCGGGCCuGC-GCGGU-GCG---AGcGAGA- -5'
29855 5' -63.6 NC_006273.1 + 205157 0.66 0.668526
Target:  5'- cGGGCgCGGAaaguguccuCGCCACGCUgGC-Cg -3'
miRNA:   3'- -CCCGgGCCUgc-------GCGGUGCGAgCGaGa -5'
29855 5' -63.6 NC_006273.1 + 89488 0.67 0.658214
Target:  5'- aGGCCUGcGugGCGCC-CGCcaccucgUCGCggCUg -3'
miRNA:   3'- cCCGGGC-CugCGCGGuGCG-------AGCGa-GA- -5'
29855 5' -63.6 NC_006273.1 + 129508 0.67 0.657275
Target:  5'- cGGGgaaagcagcgcgaCCCGGAgaauggccggcgcUGCGCCGCGC-CGcCUCg -3'
miRNA:   3'- -CCC-------------GGGCCU-------------GCGCGGUGCGaGC-GAGa -5'
29855 5' -63.6 NC_006273.1 + 48863 0.67 0.649761
Target:  5'- cGGCagugauuUGGGgGCGCCACaGCUCGCgCUa -3'
miRNA:   3'- cCCGg------GCCUgCGCGGUG-CGAGCGaGA- -5'
29855 5' -63.6 NC_006273.1 + 51691 0.67 0.649761
Target:  5'- uGGCCUGGAUGUggGCCAacgaauugGCUCGCa-- -3'
miRNA:   3'- cCCGGGCCUGCG--CGGUg-------CGAGCGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.