Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29855 | 5' | -63.6 | NC_006273.1 | + | 116520 | 0.67 | 0.649761 |
Target: 5'- aGGGCCagGGACaGCcuucguugucgGUCGCGCUccCGCUCa -3' miRNA: 3'- -CCCGGg-CCUG-CG-----------CGGUGCGA--GCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 48863 | 0.67 | 0.649761 |
Target: 5'- cGGCagugauuUGGGgGCGCCACaGCUCGCgCUa -3' miRNA: 3'- cCCGg------GCCUgCGCGGUG-CGAGCGaGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 113613 | 0.67 | 0.648821 |
Target: 5'- cGGGCCgUGGuACGCGCgcgaccccgcgguCACGCUgucgcaGCUCUu -3' miRNA: 3'- -CCCGG-GCC-UGCGCG-------------GUGCGAg-----CGAGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 134986 | 0.67 | 0.640358 |
Target: 5'- -aGCCCGGucaaaugaGCGCCugGCUaCGCg-- -3' miRNA: 3'- ccCGGGCCug------CGCGGugCGA-GCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 98169 | 0.67 | 0.640358 |
Target: 5'- cGGUuuGGGCGCcgaGCGCUCGCgCUg -3' miRNA: 3'- cCCGggCCUGCGcggUGCGAGCGaGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 43017 | 0.67 | 0.640358 |
Target: 5'- cGGGUaaguguagCCGcGACGCGCCACgGC-CGCg-- -3' miRNA: 3'- -CCCG--------GGC-CUGCGCGGUG-CGaGCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 201174 | 0.67 | 0.639417 |
Target: 5'- cGGGUugcccgucaaguaCCGGACGCaCCGCGC-CGC-Cg -3' miRNA: 3'- -CCCG-------------GGCCUGCGcGGUGCGaGCGaGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 196025 | 0.67 | 0.630949 |
Target: 5'- cGGCCCGGA-GCGCCuguUGCUguCUCa -3' miRNA: 3'- cCCGGGCCUgCGCGGu--GCGAgcGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 1132 | 0.67 | 0.630949 |
Target: 5'- cGGCCCGGA-GCGCCuguUGCUguCUCa -3' miRNA: 3'- cCCGGGCCUgCGCGGu--GCGAgcGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 139343 | 0.67 | 0.628126 |
Target: 5'- cGGuGCCCGcGACuCGCCccuccuccaagaugGCGC-CGCUCg -3' miRNA: 3'- -CC-CGGGC-CUGcGCGG--------------UGCGaGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 140989 | 0.67 | 0.62154 |
Target: 5'- aGGUCCGGAgCGgGCCGCGCcCGgUg- -3' miRNA: 3'- cCCGGGCCU-GCgCGGUGCGaGCgAga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 40928 | 0.67 | 0.612139 |
Target: 5'- -cGCUCGGGCggacgcgugcgGCGUCGCGaCUCGCUUg -3' miRNA: 3'- ccCGGGCCUG-----------CGCGGUGC-GAGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 128950 | 0.67 | 0.612139 |
Target: 5'- -uGCCUGGACGCGCaauuCGUUUGCa-- -3' miRNA: 3'- ccCGGGCCUGCGCGgu--GCGAGCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 203994 | 0.68 | 0.60275 |
Target: 5'- cGGCgauUCGGGCGUGCCGCGaugccgcaGCUCUu -3' miRNA: 3'- cCCG---GGCCUGCGCGGUGCgag-----CGAGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 198270 | 0.68 | 0.60275 |
Target: 5'- aGGGCCUGcGGCGUuacuuGCgGCGCUUcgaggGCUCg -3' miRNA: 3'- -CCCGGGC-CUGCG-----CGgUGCGAG-----CGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 39147 | 0.68 | 0.60275 |
Target: 5'- aGGUCCGu-CGCGcCCACGC-CGUUCa -3' miRNA: 3'- cCCGGGCcuGCGC-GGUGCGaGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 31489 | 0.68 | 0.60275 |
Target: 5'- cGGCCUGGGC-UGCUguuggguaACGCUgGCUCa -3' miRNA: 3'- cCCGGGCCUGcGCGG--------UGCGAgCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 234040 | 0.68 | 0.60275 |
Target: 5'- aGGUCCGu-CGCGcCCACGC-CGUUCa -3' miRNA: 3'- cCCGGGCcuGCGC-GGUGCGaGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 217699 | 0.68 | 0.60275 |
Target: 5'- uGGCCCagggggugGGACGCGCCGC-CUacacaaagUGCUCc -3' miRNA: 3'- cCCGGG--------CCUGCGCGGUGcGA--------GCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 33009 | 0.68 | 0.584033 |
Target: 5'- aGGGCagauccaGGugGCGaCCGCGCUgGCg-- -3' miRNA: 3'- -CCCGgg-----CCugCGC-GGUGCGAgCGaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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