miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 5' -63.6 NC_006273.1 + 1132 0.67 0.630949
Target:  5'- cGGCCCGGA-GCGCCuguUGCUguCUCa -3'
miRNA:   3'- cCCGGGCCUgCGCGGu--GCGAgcGAGa -5'
29855 5' -63.6 NC_006273.1 + 1644 0.66 0.692763
Target:  5'- uGGGCgUGGgcaccccGCGCGCgACGCUgcugccucagccggCGCUCc -3'
miRNA:   3'- -CCCGgGCC-------UGCGCGgUGCGA--------------GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 2231 0.66 0.683469
Target:  5'- cGGGUCCGGcggcgucggggacCGUGCCGCGCgccaUGCUg- -3'
miRNA:   3'- -CCCGGGCCu------------GCGCGGUGCGa---GCGAga -5'
29855 5' -63.6 NC_006273.1 + 2369 0.66 0.724002
Target:  5'- cGGGCgugCUGGGCGCGCUgGCGCUggggCGCg-- -3'
miRNA:   3'- -CCCG---GGCCUGCGCGG-UGCGA----GCGaga -5'
29855 5' -63.6 NC_006273.1 + 8825 0.69 0.546992
Target:  5'- cGGCCUGGG-GCGCgG-GCUCGUUCg -3'
miRNA:   3'- cCCGGGCCUgCGCGgUgCGAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 13593 0.66 0.724002
Target:  5'- cGGCCCGGGC-CGCCGUGCUgGa--- -3'
miRNA:   3'- cCCGGGCCUGcGCGGUGCGAgCgaga -5'
29855 5' -63.6 NC_006273.1 + 15655 0.66 0.687191
Target:  5'- cGGGCCCGcGGCuGCacuGCCugGUgacgacgCGUUCg -3'
miRNA:   3'- -CCCGGGC-CUG-CG---CGGugCGa------GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 30180 0.66 0.714882
Target:  5'- gGGGCCCGu-CGCacaCCACGCUcCGUcuUCUu -3'
miRNA:   3'- -CCCGGGCcuGCGc--GGUGCGA-GCG--AGA- -5'
29855 5' -63.6 NC_006273.1 + 31489 0.68 0.60275
Target:  5'- cGGCCUGGGC-UGCUguuggguaACGCUgGCUCa -3'
miRNA:   3'- cCCGGGCCUGcGCGG--------UGCGAgCGAGa -5'
29855 5' -63.6 NC_006273.1 + 33009 0.68 0.584033
Target:  5'- aGGGCagauccaGGugGCGaCCGCGCUgGCg-- -3'
miRNA:   3'- -CCCGgg-----CCugCGC-GGUGCGAgCGaga -5'
29855 5' -63.6 NC_006273.1 + 39147 0.68 0.60275
Target:  5'- aGGUCCGu-CGCGcCCACGC-CGUUCa -3'
miRNA:   3'- cCCGGGCcuGCGC-GGUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 40499 0.66 0.702937
Target:  5'- cGGCCCGGcUGCuGCCggacaggcgacccgGCGCgcuacCGCUCa -3'
miRNA:   3'- cCCGGGCCuGCG-CGG--------------UGCGa----GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 40928 0.67 0.612139
Target:  5'- -cGCUCGGGCggacgcgugcgGCGUCGCGaCUCGCUUg -3'
miRNA:   3'- ccCGGGCCUG-----------CGCGGUGC-GAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 43017 0.67 0.640358
Target:  5'- cGGGUaaguguagCCGcGACGCGCCACgGC-CGCg-- -3'
miRNA:   3'- -CCCG--------GGC-CUGCGCGGUG-CGaGCGaga -5'
29855 5' -63.6 NC_006273.1 + 48863 0.67 0.649761
Target:  5'- cGGCagugauuUGGGgGCGCCACaGCUCGCgCUa -3'
miRNA:   3'- cCCGg------GCCUgCGCGGUG-CGAGCGaGA- -5'
29855 5' -63.6 NC_006273.1 + 51691 0.67 0.649761
Target:  5'- uGGCCUGGAUGUggGCCAacgaauugGCUCGCa-- -3'
miRNA:   3'- cCCGGGCCUGCG--CGGUg-------CGAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 68049 0.66 0.723093
Target:  5'- uGGGCUCGGccaGCGCCGCcguggccGC-CGCUg- -3'
miRNA:   3'- -CCCGGGCCug-CGCGGUG-------CGaGCGAga -5'
29855 5' -63.6 NC_006273.1 + 68549 0.71 0.393272
Target:  5'- -cGUCCGGugGUGCCGCGCUCuacUUCg -3'
miRNA:   3'- ccCGGGCCugCGCGGUGCGAGc--GAGa -5'
29855 5' -63.6 NC_006273.1 + 70096 0.66 0.69369
Target:  5'- -aGCUCGGACacaGCGCCGCGCUggaugacggugaugCGCggCUa -3'
miRNA:   3'- ccCGGGCCUG---CGCGGUGCGA--------------GCGa-GA- -5'
29855 5' -63.6 NC_006273.1 + 73877 0.66 0.702937
Target:  5'- cGGCCgacaugCGGGCGCGCCACagagauggaccacuGC-CGCUg- -3'
miRNA:   3'- cCCGG------GCCUGCGCGGUG--------------CGaGCGAga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.