miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 5' -63.6 NC_006273.1 + 81024 0.66 0.714882
Target:  5'- cGGGCagaucaaaGaGACG-GUgGCGCUCGCUCa -3'
miRNA:   3'- -CCCGgg------C-CUGCgCGgUGCGAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 84106 0.75 0.257175
Target:  5'- cGGCCCaGGAacgcuugaaaggucCGCGCCGCGC-CGCUUg -3'
miRNA:   3'- cCCGGG-CCU--------------GCGCGGUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 85826 0.66 0.668526
Target:  5'- cGGCCCGGcCGcCGCCAcCGUuauUC-CUCUg -3'
miRNA:   3'- cCCGGGCCuGC-GCGGU-GCG---AGcGAGA- -5'
29855 5' -63.6 NC_006273.1 + 89488 0.67 0.658214
Target:  5'- aGGCCUGcGugGCGCC-CGCcaccucgUCGCggCUg -3'
miRNA:   3'- cCCGGGC-CugCGCGGuGCG-------AGCGa-GA- -5'
29855 5' -63.6 NC_006273.1 + 93028 0.68 0.565434
Target:  5'- cGGCCCGGGCccgaUGCCACGg-CGCUg- -3'
miRNA:   3'- cCCGGGCCUGc---GCGGUGCgaGCGAga -5'
29855 5' -63.6 NC_006273.1 + 94393 0.73 0.307613
Target:  5'- cGGGCaCCGGGCGCgGCC-CGCUCcggacCUCg -3'
miRNA:   3'- -CCCG-GGCCUGCG-CGGuGCGAGc----GAGa -5'
29855 5' -63.6 NC_006273.1 + 98029 0.66 0.714882
Target:  5'- -aGCCCGGugcgaggacaACGCGCCGCGCgcacuuccaCGCcCa -3'
miRNA:   3'- ccCGGGCC----------UGCGCGGUGCGa--------GCGaGa -5'
29855 5' -63.6 NC_006273.1 + 98169 0.67 0.640358
Target:  5'- cGGUuuGGGCGCcgaGCGCUCGCgCUg -3'
miRNA:   3'- cCCGggCCUGCGcggUGCGAGCGaGA- -5'
29855 5' -63.6 NC_006273.1 + 101208 0.77 0.176296
Target:  5'- gGGGCaccgaggCGGACGCgGCCACGCgUCGCUUg -3'
miRNA:   3'- -CCCGg------GCCUGCG-CGGUGCG-AGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 101573 0.73 0.334497
Target:  5'- cGGGCgCGG-CGU-UCGCGCUCGCUCa -3'
miRNA:   3'- -CCCGgGCCuGCGcGGUGCGAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 110110 1.09 0.00105
Target:  5'- cGGGCCCGGACGCGCCACGCUCGCUCUg -3'
miRNA:   3'- -CCCGGGCCUGCGCGGUGCGAGCGAGA- -5'
29855 5' -63.6 NC_006273.1 + 111328 0.7 0.449057
Target:  5'- aGGCCUGGccgcauaGCGCgGCCGCGC-CGCUg- -3'
miRNA:   3'- cCCGGGCC-------UGCG-CGGUGCGaGCGAga -5'
29855 5' -63.6 NC_006273.1 + 113140 0.66 0.687191
Target:  5'- cGGCCgcagaGGGCGCGCCGCuCagUCGC-CUa -3'
miRNA:   3'- cCCGGg----CCUGCGCGGUGcG--AGCGaGA- -5'
29855 5' -63.6 NC_006273.1 + 113613 0.67 0.648821
Target:  5'- cGGGCCgUGGuACGCGCgcgaccccgcgguCACGCUgucgcaGCUCUu -3'
miRNA:   3'- -CCCGG-GCC-UGCGCG-------------GUGCGAg-----CGAGA- -5'
29855 5' -63.6 NC_006273.1 + 116520 0.67 0.649761
Target:  5'- aGGGCCagGGACaGCcuucguugucgGUCGCGCUccCGCUCa -3'
miRNA:   3'- -CCCGGg-CCUG-CG-----------CGGUGCGA--GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 116825 0.66 0.677875
Target:  5'- cGGGCUCGGAaa--CCACGC-CGUUCa -3'
miRNA:   3'- -CCCGGGCCUgcgcGGUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 124437 0.68 0.574716
Target:  5'- cGGCCgcgCGGGCGUgcgcggcucGCCgACGCUgCGCUCg -3'
miRNA:   3'- cCCGG---GCCUGCG---------CGG-UGCGA-GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 128950 0.67 0.612139
Target:  5'- -uGCCUGGACGCGCaauuCGUUUGCa-- -3'
miRNA:   3'- ccCGGGCCUGCGCGgu--GCGAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 129508 0.67 0.657275
Target:  5'- cGGGgaaagcagcgcgaCCCGGAgaauggccggcgcUGCGCCGCGC-CGcCUCg -3'
miRNA:   3'- -CCC-------------GGGCCU-------------GCGCGGUGCGaGC-GAGa -5'
29855 5' -63.6 NC_006273.1 + 129980 0.66 0.687191
Target:  5'- uGGCCaCGcAUGUGCUACGCggaUUGCUCUc -3'
miRNA:   3'- cCCGG-GCcUGCGCGGUGCG---AGCGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.