miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 5' -63.6 NC_006273.1 + 234040 0.68 0.60275
Target:  5'- aGGUCCGu-CGCGcCCACGC-CGUUCa -3'
miRNA:   3'- cCCGGGCcuGCGC-GGUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 232850 0.66 0.714882
Target:  5'- cGGCCCGGACGUagcaaaaaaGCUaacugcccguGCGgCUCGCg-- -3'
miRNA:   3'- cCCGGGCCUGCG---------CGG----------UGC-GAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 227344 0.69 0.510728
Target:  5'- cGGCCgUGGagagGCGuCGCCGCGuCUCGUUCg -3'
miRNA:   3'- cCCGG-GCC----UGC-GCGGUGC-GAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 223125 0.66 0.696469
Target:  5'- aGGaGCaCCaGACGgGCCugGCUaggugGCUCa -3'
miRNA:   3'- -CC-CG-GGcCUGCgCGGugCGAg----CGAGa -5'
29855 5' -63.6 NC_006273.1 + 222831 0.66 0.724002
Target:  5'- uGGCCgcagagcagcaaCGGACGCGUCAU-CUCGC-CUg -3'
miRNA:   3'- cCCGG------------GCCUGCGCGGUGcGAGCGaGA- -5'
29855 5' -63.6 NC_006273.1 + 217699 0.68 0.60275
Target:  5'- uGGCCCagggggugGGACGCGCCGC-CUacacaaagUGCUCc -3'
miRNA:   3'- cCCGGG--------CCUGCGCGGUGcGA--------GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 211886 0.69 0.510728
Target:  5'- uGGCaaCGG-CGUGCCGCGCUCGUgUCa -3'
miRNA:   3'- cCCGg-GCCuGCGCGGUGCGAGCG-AGa -5'
29855 5' -63.6 NC_006273.1 + 205157 0.66 0.668526
Target:  5'- cGGGCgCGGAaaguguccuCGCCACGCUgGC-Cg -3'
miRNA:   3'- -CCCGgGCCUgc-------GCGGUGCGAgCGaGa -5'
29855 5' -63.6 NC_006273.1 + 203994 0.68 0.60275
Target:  5'- cGGCgauUCGGGCGUGCCGCGaugccgcaGCUCUu -3'
miRNA:   3'- cCCG---GGCCUGCGCGGUGCgag-----CGAGA- -5'
29855 5' -63.6 NC_006273.1 + 201174 0.67 0.639417
Target:  5'- cGGGUugcccgucaaguaCCGGACGCaCCGCGC-CGC-Cg -3'
miRNA:   3'- -CCCG-------------GGCCUGCGcGGUGCGaGCGaGa -5'
29855 5' -63.6 NC_006273.1 + 198652 0.66 0.724002
Target:  5'- cGGGCCgagcugugccgcCGcucGCGCGCCucCGCUCGCg-- -3'
miRNA:   3'- -CCCGG------------GCc--UGCGCGGu-GCGAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 198270 0.68 0.60275
Target:  5'- aGGGCCUGcGGCGUuacuuGCgGCGCUUcgaggGCUCg -3'
miRNA:   3'- -CCCGGGC-CUGCG-----CGgUGCGAG-----CGAGa -5'
29855 5' -63.6 NC_006273.1 + 197262 0.66 0.724002
Target:  5'- cGGGCgugCUGGGCGCGCUgGCGCUggggCGCg-- -3'
miRNA:   3'- -CCCG---GGCCUGCGCGG-UGCGA----GCGaga -5'
29855 5' -63.6 NC_006273.1 + 197124 0.66 0.683469
Target:  5'- cGGGUCCGGcggcgucggggacCGUGCCGCGCgccaUGCUg- -3'
miRNA:   3'- -CCCGGGCCu------------GCGCGGUGCGa---GCGAga -5'
29855 5' -63.6 NC_006273.1 + 196537 0.66 0.692763
Target:  5'- uGGGCgUGGgcaccccGCGCGCgACGCUgcugccucagccggCGCUCc -3'
miRNA:   3'- -CCCGgGCC-------UGCGCGgUGCGA--------------GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 196025 0.67 0.630949
Target:  5'- cGGCCCGGA-GCGCCuguUGCUguCUCa -3'
miRNA:   3'- cCCGGGCCUgCGCGGu--GCGAgcGAGa -5'
29855 5' -63.6 NC_006273.1 + 189504 0.66 0.677875
Target:  5'- cGGCCCGG-C-CGCCGCGCUgUGUg-- -3'
miRNA:   3'- cCCGGGCCuGcGCGGUGCGA-GCGaga -5'
29855 5' -63.6 NC_006273.1 + 189054 0.66 0.677875
Target:  5'- gGGGCCCGGACcggcgGCGUagGCGgC-CGCUUc -3'
miRNA:   3'- -CCCGGGCCUG-----CGCGg-UGC-GaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 185685 0.66 0.696469
Target:  5'- aGGGUCCGGGCuuuauGCGCUACcaaCUCaucguGCUCa -3'
miRNA:   3'- -CCCGGGCCUG-----CGCGGUGc--GAG-----CGAGa -5'
29855 5' -63.6 NC_006273.1 + 183092 0.69 0.519706
Target:  5'- uGGGCaaGGugGCGCUuCGCUaCGCg-- -3'
miRNA:   3'- -CCCGggCCugCGCGGuGCGA-GCGaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.