miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29855 5' -63.6 NC_006273.1 + 51691 0.67 0.649761
Target:  5'- uGGCCUGGAUGUggGCCAacgaauugGCUCGCa-- -3'
miRNA:   3'- cCCGGGCCUGCG--CGGUg-------CGAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 33009 0.68 0.584033
Target:  5'- aGGGCagauccaGGugGCGaCCGCGCUgGCg-- -3'
miRNA:   3'- -CCCGgg-----CCugCGC-GGUGCGAgCGaga -5'
29855 5' -63.6 NC_006273.1 + 234040 0.68 0.60275
Target:  5'- aGGUCCGu-CGCGcCCACGC-CGUUCa -3'
miRNA:   3'- cCCGGGCcuGCGC-GGUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 217699 0.68 0.60275
Target:  5'- uGGCCCagggggugGGACGCGCCGC-CUacacaaagUGCUCc -3'
miRNA:   3'- cCCGGG--------CCUGCGCGGUGcGA--------GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 40928 0.67 0.612139
Target:  5'- -cGCUCGGGCggacgcgugcgGCGUCGCGaCUCGCUUg -3'
miRNA:   3'- ccCGGGCCUG-----------CGCGGUGC-GAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 196025 0.67 0.630949
Target:  5'- cGGCCCGGA-GCGCCuguUGCUguCUCa -3'
miRNA:   3'- cCCGGGCCUgCGCGGu--GCGAgcGAGa -5'
29855 5' -63.6 NC_006273.1 + 43017 0.67 0.640358
Target:  5'- cGGGUaaguguagCCGcGACGCGCCACgGC-CGCg-- -3'
miRNA:   3'- -CCCG--------GGC-CUGCGCGGUG-CGaGCGaga -5'
29855 5' -63.6 NC_006273.1 + 113613 0.67 0.648821
Target:  5'- cGGGCCgUGGuACGCGCgcgaccccgcgguCACGCUgucgcaGCUCUu -3'
miRNA:   3'- -CCCGG-GCC-UGCGCG-------------GUGCGAg-----CGAGA- -5'
29855 5' -63.6 NC_006273.1 + 116520 0.67 0.649761
Target:  5'- aGGGCCagGGACaGCcuucguugucgGUCGCGCUccCGCUCa -3'
miRNA:   3'- -CCCGGg-CCUG-CG-----------CGGUGCGA--GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 124437 0.68 0.574716
Target:  5'- cGGCCgcgCGGGCGUgcgcggcucGCCgACGCUgCGCUCg -3'
miRNA:   3'- cCCGG---GCCUGCG---------CGG-UGCGA-GCGAGa -5'
29855 5' -63.6 NC_006273.1 + 137399 0.68 0.556191
Target:  5'- -cGCCgCGGACGCcuGCgACGUUgGCUCUc -3'
miRNA:   3'- ccCGG-GCCUGCG--CGgUGCGAgCGAGA- -5'
29855 5' -63.6 NC_006273.1 + 144893 0.68 0.556191
Target:  5'- aGGGCCaCGcucaaGCGCgCGCGCcCGCUCa -3'
miRNA:   3'- -CCCGG-GCcug--CGCG-GUGCGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 142371 0.77 0.188939
Target:  5'- cGGGCCCGGGcCGCGuuCCGCaGC-CGCUCa -3'
miRNA:   3'- -CCCGGGCCU-GCGC--GGUG-CGaGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 94393 0.73 0.307613
Target:  5'- cGGGCaCCGGGCGCgGCC-CGCUCcggacCUCg -3'
miRNA:   3'- -CCCG-GGCCUGCG-CGGuGCGAGc----GAGa -5'
29855 5' -63.6 NC_006273.1 + 101573 0.73 0.334497
Target:  5'- cGGGCgCGG-CGU-UCGCGCUCGCUCa -3'
miRNA:   3'- -CCCGgGCCuGCGcGGUGCGAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 147499 0.71 0.433255
Target:  5'- gGGGCCauGGCGauagcggcgGCC-CGCUCGCUCg -3'
miRNA:   3'- -CCCGGgcCUGCg--------CGGuGCGAGCGAGa -5'
29855 5' -63.6 NC_006273.1 + 111328 0.7 0.449057
Target:  5'- aGGCCUGGccgcauaGCGCgGCCGCGC-CGCUg- -3'
miRNA:   3'- cCCGGGCC-------UGCG-CGGUGCGaGCGAga -5'
29855 5' -63.6 NC_006273.1 + 143159 0.7 0.475503
Target:  5'- cGGGCaCGG-CGCGCCGCauccccaacuGCUCGCa-- -3'
miRNA:   3'- -CCCGgGCCuGCGCGGUG----------CGAGCGaga -5'
29855 5' -63.6 NC_006273.1 + 142817 0.69 0.510728
Target:  5'- uGGGCaCGGGCGUGCacCGCGgUCuGCUCa -3'
miRNA:   3'- -CCCGgGCCUGCGCG--GUGCgAG-CGAGa -5'
29855 5' -63.6 NC_006273.1 + 8825 0.69 0.546992
Target:  5'- cGGCCUGGG-GCGCgG-GCUCGUUCg -3'
miRNA:   3'- cCCGGGCCUgCGCGgUgCGAGCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.